BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952095 Length=393 Score E Sequences producing significant alignments: (Bits) Value AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of huma... 448 3e-125 > AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human splicing factor SC35 | chr5:25681202-25683641 REVERSE LENGTH=1457 Length=1457 Score = 448 bits (242), Expect = 3e-125 Identities = 255/261 (98%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 3 TCTCCGCCGGCGGGAAAACTATGTCGCACTTCGGAAGGTCAGGTCCACCGGATATCAGCG 62 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 69 TCTCCGCCGGCGGGAAAACCATGTCGCACTTCGGAAGGTCAGGTCCACCGGATATCAGCG 128 Query 63 ACACCTACTCGCTTCTCGTCCTTAACATAACCTTCCGTACGACTGCTGATGATCTCTATC 122 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 129 ACACCTACTCACTTCTCGTCCTTAACATCACCTTCCGTACGACTGCTGATGATCTCTATC 188 Query 123 CTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTCTTTATTCCCAGAGATCGAAGGACTG 182 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 189 CTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTGTTTATTCCCAGAGATCGAAGGACTG 248 Query 183 GTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGATGAAGCTCACAAAGCAG 242 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 249 GTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGACGAAGCTCACAAAGCAG 308 Query 243 TGGAAAGGCTTGATGGTAAGA 263 |||||||||||||||| |||| Sbjct 309 TGGAAAGGCTTGATGG-AAGA 328 Score = 78.7 bits (42), Expect = 4e-14 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 346 GGAAGAGTTGTCGATGGCCGAGAAATAACTGTTCAGTTTGCGAAATAT 393 ||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 323 GGAAGAGTTGTTGATGGCAGAGAAATAACTGTTCAGTTTGCGAAATAT 370 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18548799381 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5