BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952095

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of huma...   448    3e-125


> AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human 
splicing factor SC35 | chr5:25681202-25683641 REVERSE LENGTH=1457
Length=1457

 Score =  448 bits (242),  Expect = 3e-125
 Identities = 255/261 (98%), Gaps = 1/261 (0%)
 Strand=Plus/Plus

Query  3    TCTCCGCCGGCGGGAAAACTATGTCGCACTTCGGAAGGTCAGGTCCACCGGATATCAGCG  62
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  69   TCTCCGCCGGCGGGAAAACCATGTCGCACTTCGGAAGGTCAGGTCCACCGGATATCAGCG  128

Query  63   ACACCTACTCGCTTCTCGTCCTTAACATAACCTTCCGTACGACTGCTGATGATCTCTATC  122
            |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  129  ACACCTACTCACTTCTCGTCCTTAACATCACCTTCCGTACGACTGCTGATGATCTCTATC  188

Query  123  CTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTCTTTATTCCCAGAGATCGAAGGACTG  182
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  189  CTCTATTCGCAAAGTATGGAAAGGTCGTTGATGTGTTTATTCCCAGAGATCGAAGGACTG  248

Query  183  GTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGATGAAGCTCACAAAGCAG  242
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  249  GTGATTCGCGTGGTTTTGCGTTTGTTCGGTATAAGTATAAAGACGAAGCTCACAAAGCAG  308

Query  243  TGGAAAGGCTTGATGGTAAGA  263
            |||||||||||||||| ||||
Sbjct  309  TGGAAAGGCTTGATGG-AAGA  328


 Score = 78.7 bits (42),  Expect = 4e-14
 Identities = 46/48 (96%), Gaps = 0/48 (0%)
 Strand=Plus/Plus

Query  346  GGAAGAGTTGTCGATGGCCGAGAAATAACTGTTCAGTTTGCGAAATAT  393
            ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  323  GGAAGAGTTGTTGATGGCAGAGAAATAACTGTTCAGTTTGCGAAATAT  370



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5