BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952099

Length=1228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr...   355    5e-97


> AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr4:8410054-8412557 
FORWARD LENGTH=1872
Length=1872

 Score =  355 bits (192),  Expect = 5e-97
 Identities = 243/267 (91%), Gaps = 6/267 (2%)
 Strand=Plus/Plus

Query  248   TTGTTGTACAAGACGAAGCCGTGAAAGCTGTAGCTGCGGCAATTCTAAGGTCAAGGGTTG  307
             |||||| |||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||
Sbjct  1607  TTGTTGGACAAGACGAAGCTGTGAAAGCTGTGGCTGCTGCAATACTAAGGTCGAGGGTTG  1666

Query  308   GACTAGGAAGGCCACAACAACCATCTGGTTCCTTTCTTTTCCTCGGTCCAACTGGTGTTG  367
             |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  1667  GACTAGGAAGGCCACAACAACCGTCTGGTTCCTTTCTCTTCCTCGGTCCAACTGGTGTTG  1726

Query  368   GTAAAACTGAGCTGGCTAAGGCTCTTGCTGAGCAACTCTTTTACGA-TGAAAACCTACTC  426
             ||||||| ||||||||||||||||| ||||||||||||||| || | |||||||||||||
Sbjct  1727  GTAAAACCGAGCTGGCTAAGGCTCTGGCTGAGCAACTCTTTGAC-AGTGAAAACCTACTC  1785

Query  427   GTTAGGCTTGATATGTCGGAGTATATTGATAGATACACTGTTAGTAAACTTATAGGGGCA  486
             ||||||||||||||||||||||||| ||| | || | |||||| ||||||||||||||||
Sbjct  1786  GTTAGGCTTGATATGTCGGAGTATAATGACAAATTCTCTGTTAATAAACTTATAGGGGCA  1845

Query  487   CCAGCTGG----GTACATTGGTCATGA  509
             ||| ||||    |||||||||||||||
Sbjct  1846  CCACCTGGATACGTACATTGGTCATGA  1872



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60341055090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5