BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952110
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:2... 187 7e-47
AT4G14103.2 | Symbols: | F-box/RNI-like superfamily protein | ... 139 2e-32
AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein | ... 134 9e-31
AT5G50500.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 95.3 4e-19
AT2G23880.1 | Symbols: | transposable element gene | chr2:1016... 67.6 9e-11
> AT3G59240.1 | Symbols: | RNI-like superfamily protein | chr3:21898682-21900364
REVERSE LENGTH=1515
Length=1515
Score = 187 bits (101), Expect = 7e-47
Identities = 267/345 (77%), Gaps = 19/345 (6%)
Strand=Plus/Plus
Query 32 GTTCCAAAGATATAATCAGC-ACTCTACCAGAACCTCTTATTTGCCAAAT-CTTGTCTTG 89
||| |||||||||||||||| | |||||||||| ||||||||||||| | || ||| |
Sbjct 14 GTTGCAAAGATATAATCAGCGA-TCTACCAGAAGCTCTTATTTGCCACTTACT-GTCCT- 70
Query 90 TC-TTCCCACAAAAGAAGCTGCTTTAACATCGCTTCTCTC-GAAAAAATGGCGGTATCTC 147
|| |||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||
Sbjct 71 TCGTTCCCACAAAAGAAGCTGCTTTAACATCACTTCTCTCCGAAAAA-TGGCGTTATCTC 129
Query 148 TTTGCTTTCACACCAAATCTTGAGTTT-GATTACTCCTCGGTATATCTGCATATTGAAGA 206
|||||||| |||||| |||||| ||| ||| | | ||||||| |||| | | |
Sbjct 130 TTTGCTTTTGCACCAATTCTTGA-TTTCGATGA-T--TCGGTATGGATGCAAAGTCCATT 185
Query 207 GGGTAAAGCAAAAAAGGATGAGATTCATAGAATGTTTACAGATTTCGTGGATAGAGTATT 266
|| | | || || | | | | ||||||||| ||| | ||||||||||||||||||||
Sbjct 186 GGTTTA--CATGAATG-A-G-G-TTCATAGAAAGTTCATGGATTTCGTGGATAGAGTATT 239
Query 267 GGCTTTGCAAGCAAATTCTACTCCAAATAAGTTCTCTTTCAAGTGTGGACCTGATGTTGA 326
|| |||||| | ||||| |||| | || |||||| |||| ||| || || | ||||
Sbjct 240 GGGTTTGCAGGGTAATTCCACTCTAGTTAGGTTCTCACTCAACTGTCGAAATGGTATTGA 299
Query 327 TCCAGTTTGTGTCATTCGTTGGATATTAACCGTGTTGGAACGTGG 371
|| || || || || | ||||||| || ||| | ||||||||
Sbjct 300 TCGAGAATGCATCTTTAGATGGATATCAAATGTGATAGAACGTGG 344
> AT4G14103.2 | Symbols: | F-box/RNI-like superfamily protein
| chr4:8126915-8128833 FORWARD LENGTH=1608
Length=1608
Score = 139 bits (75), Expect = 2e-32
Identities = 277/369 (75%), Gaps = 35/369 (9%)
Strand=Plus/Plus
Query 15 GAAAAAGATGGAT-TT--TGGTTCCAAAGATATAATCAGCACTCTACCAGAACCTC-TTA 70
||||| ||||||| || |||||| | |||| ||||||| | | |||| | | | |||
Sbjct 27 GAAAAGGATGGATCTTAGTGGTTCTAGAGATGTAATCAGTAGTTTACC-GGATGACATTA 85
Query 71 TTTGCCAAATCTTGT-CTTGTCTTCCCACAAAAGAAGCTGCTTTAACATCGCTTCTCTCG 129
|| ||| ||||||| ||| || ||||| ||||||||||||| || ||| |||| |||
Sbjct 86 GTTCCCATATCTTGTCCTT-CCTCCCCACTAAAGAAGCTGCTTCCACTTCGGTTCTTTCG 144
Query 130 AAAAAATGGCGGTATCTCTTTGCTTTCA-CACCAAATCTTGAGTTTG-ATTACTCCTCGG 187
|||||||||||||||||||||||||| | || |||||||| |||| || |||| | |
Sbjct 145 AAAAAATGGCGGTATCTCTTTGCTTTTGTC-CCTAATCTTGA-TTTGGATGACTC-T-GT 200
Query 188 TATATCTGCATATTGAAGAGGGTAAAGCAAAAAAGGATGAGATT-CATAGAATGTTT-AC 245
| |||||| || ||| || | | | | ||| | ||| | || || |||| |
Sbjct 201 T-TATCTGAATCCTGA-GAATG-AGA-C------GGA--A-ATTTC-TACAA-GTTTTAT 245
Query 246 AGATTTCGTGGATAGAGTATTGGCTTTGCAAGCAAATTCTACTCCAAATAAGTTCTCTTT 305
||||| ||||||||||| ||||||||||||| |||||| ||| | | ||||||||| |
Sbjct 246 GGATTTTGTGGATAGAGTGTTGGCTTTGCAAGGTAATTCTCCTCTACACAAGTTCTCTCT 305
Query 306 CAAG-TGTGGACCTGATGTTGATCCAGTTTGTGTCATTCGTTGGATAT-TAACCGTGTTG 363
||| | |||| || |||||||||| || |||||| ||||||| ||| ||||||
Sbjct 306 AAAGAT-TGGAGATGGCATTGATCCAGTCCGTATCATTCCTTGGATAAATAAT-GTGTTG 363
Query 364 GAACGTGGG 372
||||| |||
Sbjct 364 GAACG-GGG 371
> AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:8124415-8126514 FORWARD LENGTH=1825
Length=1825
Score = 134 bits (72), Expect = 9e-31
Identities = 274/366 (75%), Gaps = 36/366 (10%)
Strand=Plus/Plus
Query 15 GAAAAAGATGGAT-TT--TGGTTCCAAAGATATAATCAGCACTCTACCAGAA-CCTCTTA 70
||||||||||||| || ||||| | |||||||||||| | | |||||||| || |||
Sbjct 100 GAAAAAGATGGATCTTAGTGGTTGTAGAGATATAATCAGTAGTTTACCAGAAGCC-ATTA 158
Query 71 TTTGCCAAATCTTGT-CTTGTCTTCCCACAAAAGAAGCTGCTTTAACATCGCTTCTCTCG 129
|||||| ||| | | ||| |||||||| ||||||||||||| || ||| |||| |||
Sbjct 159 GTTGCCATATCCTATCCTT-CCTTCCCACTAAAGAAGCTGCTTCCACTTCGGTTCTTTCG 217
Query 130 AAAAAATGGCGGTATCTCTTTGCTTTCA-CACCAAATCTTGAGTTT-GATTACTCCTCGG 187
|||||||||||||||||||||||||| | || |||||||| ||| ||| | || | |
Sbjct 218 AAAAAATGGCGGTATCTCTTTGCTTTTGTC-CCTAATCTTGA-TTTAGATGAATC-T-GT 273
Query 188 TATATCTGCATATTGAAGAGGGTAAAGCAAAAAAGGATGAGATTCATAGAATGTTT-ACA 246
| |||||| || ||| || | | | | ||| || ||| | || |||| |
Sbjct 274 T-TATCTGAATCCTGA-GAATG-AGA-C------GGA--AGTTTCTTC-AA-GTTTTATG 319
Query 247 GATTTCGTGGATAGAGTATTGGCTTTGCAAG-CAAATTCTAC-TCCAAATAAGTTCTCTT 304
||||| ||||||||||| ||||| ||||||| ||| |||| | | | |||||||||||
Sbjct 320 GATTTTGTGGATAGAGTGTTGGCATTGCAAGGCAA-TTCTCCATT-ACATAAGTTCTCTC 377
Query 305 TCAAG-TGTGGACCTGATGTTGATCCAGTTTGTGTCATTCGTTGGATAT-TAACCGTGTT 362
| ||| | ||| || ||||| |||| || |||||| ||||||| ||| |||||
Sbjct 378 TAAAGATC-GGAGATGGCGTTGAACCAGACCGTATCATTCCTTGGATAAATAAT-GTGTT 435
Query 363 GGAACG 368
||||||
Sbjct 436 GGAACG 441
> AT5G50500.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:20562150-20562557
REVERSE LENGTH=408
Length=408
Score = 95.3 bits (51), Expect = 4e-19
Identities = 64/70 (91%), Gaps = 2/70 (3%)
Strand=Plus/Minus
Query 376 TGTTGGAACTTGTTTTTTGACGAAGTGGTTTTGATCAC-TTTCCGGTGAAGACGTTCATC 434
|||||||||||| ||||||| ||||||||| || ||| |||||||||||||||||||||
Sbjct 152 TGTTGGAACTTG-TTTTTGATGAAGTGGTTGTGGCCACTTTTCCGGTGAAGACGTTCATC 94
Query 435 GGAATGACCG 444
||||||||||
Sbjct 93 GGAATGACCG 84
> AT2G23880.1 | Symbols: | transposable element gene | chr2:10165992-10170262
REVERSE LENGTH=4271
Length=4271
Score = 67.6 bits (36), Expect = 9e-11
Identities = 58/68 (85%), Gaps = 4/68 (6%)
Strand=Plus/Plus
Query 247 GATTTCGTGGATAGAGTATTGGCTTTGCAAGCAAATTCTACTCCAA-AT-AAGTTCTCTT 304
||||||||||||||||||||||||||||||| | ||||| | |||| | || |||||
Sbjct 190 GATTTCGTGGATAGAGTATTGGCTTTGCAAGGAGATTCT-C-CCAACAAGAAATTCTCAC 247
Query 305 TCAAGTGT 312
||||||||
Sbjct 248 TCAAGTGT 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5