BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952121 Length=799 Score E Sequences producing significant alignments: (Bits) Value AT2G28460.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 366 2e-100 AT5G48320.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 62.1 8e-09 > AT2G28460.1 | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:12166573-12168874 FORWARD LENGTH=2302 Length=2302 Score = 366 bits (198), Expect = 2e-100 Identities = 378/462 (82%), Gaps = 23/462 (5%) Strand=Plus/Plus Query 8 TCTCGGCAACTCTATGGATTCAG-TGACGGAGTCGAAGCTCGTATCACTCACATCTCAAA 66 ||||| || |||||||||||| | ||| |||||||||||| |||| ||||||||||||| Sbjct 70 TCTCGACATCTCTATGGATTC-GAAGACAGAGTCGAAGCTCCTATCGCTCACATCTCAAA 128 Query 67 TACTTTCTCCCATG-GAATCTACGAA-ATCCGAT-TTGGATTGGTTTACTGATAGGAACA 123 || | |||||| | || | | || || ||| || |||||| || ||| | || | Sbjct 129 TAATGTCTCCC--GCAAAACAAATAAGATTTGATCTT-GATTGGGTTGGTGAAAAGAGGA 185 Query 124 T-CATATCTTTCATTGTTCAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAG 182 | || ||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 186 TGAAT-TCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAG 244 Query 183 CCGAAGCCAGAGTCGGAGTTTATGTCACTCACTACTCAAATAATCTCTCTACTCCACTCT 242 |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 245 CCGAAGCCGGAGTCGGAGTTCATGTCACTCACTACTCAAATATTCTCTCTACTCCACTCT 304 Query 243 ATCCATTTGGATTCTCAA-CCGAAGATGCTGTCAGATCTCATATTATTCATTTCTCaaaa 301 || ||| |||||| || |||||| ||| ||| ||||||| | | || |||||||| Sbjct 305 ATGGATTCGGATTC-CATGCCGAAGCCGCTCTCAAATCTCATCTCACTCCTTTCTCAAGG 363 Query 302 aaaCTTTGAGCATT-T-C-GACTTCAGCTTAA-CGTTCAGTCGAAC-ATTGGCACTCGAG 356 ||||||||| ||| | | |||||||| ||| | ||| ||| ||| || |||||||||| Sbjct 364 AAACTTTGACCATAATACCGACTTCAGGTTATTCTTTC-GTCAAACTAT-GGCACTCGAG 421 Query 357 CCGGAGCCGGCTATC-ATGTCACTCATATTTCAAATATTCTCCCTCGTCATCTCCATGAA 415 || ||||| ||| ||||||||||| | ||||||||||||||| || || || ||||| Sbjct 422 CCAGAGCCAA-TATTTATGTCACTCATCTATCAAATATTCTCCCTAGTAATATCTATGAA 480 Query 416 T-CTTAAGAGAGAGAAGCTTATTTCCTTATGTCCTCAAGCAT 456 | || ||||| || |||||||||||||||||||||||||||| Sbjct 481 TACT-AAGAGGGATAAGCTTATTTCCTTATGTCCTCAAGCAT 521 Score = 279 bits (151), Expect = 2e-74 Identities = 232/270 (86%), Gaps = 10/270 (4%) Strand=Plus/Plus Query 493 AAGCTATCTCGTATAGTATAGATAGCAAGTGGGAGTGTCTTCCTTTAAACTGGAAGACAT 552 |||| ||| ||| |||| ||||||||||||||| ||||||||||| ||||||||||||| Sbjct 594 AAGCAATCCCGTGGAGTAGAGATAGCAAGTGGGAATGTCTTCCTTTTAACTGGAAGACAT 653 Query 553 ACTGGCCTACAGGAGAAGGCATTAC-CTATTTTCGATGTAGAAATTGCGAAGGCCG-GAA 610 | ||| ||| ||||| | |||| | |||||||||| |||| ||||| || || || Sbjct 654 ATTGGTCTAGTGGAGATGATGTTACAC-ATTTTCGATGCCGAAACTGCGATGG-CGACAA 711 Query 611 CCATAAAGAATAT-AACAAGGCTCCGGTAGAGATCAAACACTCTCTTCATCGGAAACATT 669 ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 712 CCATAAAGAATATGAA-AAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATT 770 Query 670 CTCTTCAGCTTGTCTTGTT--ATGTGAGGAAAATTATACGAGGGTTTGCTATTGCTGTGA 727 ||||||||||||||||||| ||| ||| | |||||||||||| |||||||| || || Sbjct 771 CTCTTCAGCTTGTCTTGTTGGATGAGAGTAG--TTATACGAGGGTATGCTATTGTTGCGA 828 Query 728 TGAAGATCTCAGAAGGATGTTTTATTATTG 757 ||||||||||| |||||||||||||||||| Sbjct 829 TGAAGATCTCAAAAGGATGTTTTATTATTG 858 Score = 62.1 bits (33), Expect = 8e-09 Identities = 38/40 (95%), Gaps = 2/40 (5%) Strand=Plus/Plus Query 761 ACCAACCGAAGTGGCATGAGCATACACTTGC-TCTGTTTC 799 ||||||||||||||||||||||||||||||| | |||||| Sbjct 921 ACCAACCGAAGTGGCATGAGCATACACTTGCGT-TGTTTC 959 > AT5G48320.1 | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr5:19581705-19584748 REVERSE LENGTH=3044 Length=3044 Score = 62.1 bits (33), Expect = 8e-09 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 761 ACCAACCGAAGTGGCATGAGCATACACTTGCTC 793 ||||||||||||||||||||||||||||||||| Sbjct 1643 ACCAACCGAAGTGGCATGAGCATACACTTGCTC 1675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38881229778 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5