BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952121

Length=799
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28460.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   366    2e-100
  AT5G48320.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...  62.1    8e-09 


> AT2G28460.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr2:12166573-12168874 FORWARD LENGTH=2302
Length=2302

 Score =  366 bits (198),  Expect = 2e-100
 Identities = 378/462 (82%), Gaps = 23/462 (5%)
 Strand=Plus/Plus

Query  8    TCTCGGCAACTCTATGGATTCAG-TGACGGAGTCGAAGCTCGTATCACTCACATCTCAAA  66
            ||||| || |||||||||||| |  ||| |||||||||||| |||| |||||||||||||
Sbjct  70   TCTCGACATCTCTATGGATTC-GAAGACAGAGTCGAAGCTCCTATCGCTCACATCTCAAA  128

Query  67   TACTTTCTCCCATG-GAATCTACGAA-ATCCGAT-TTGGATTGGTTTACTGATAGGAACA  123
            || | ||||||  |  || | |  || ||  ||| || |||||| ||  ||| | ||  |
Sbjct  129  TAATGTCTCCC--GCAAAACAAATAAGATTTGATCTT-GATTGGGTTGGTGAAAAGAGGA  185

Query  124  T-CATATCTTTCATTGTTCAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAG  182
            |  || |||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct  186  TGAAT-TCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAG  244

Query  183  CCGAAGCCAGAGTCGGAGTTTATGTCACTCACTACTCAAATAATCTCTCTACTCCACTCT  242
            |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct  245  CCGAAGCCGGAGTCGGAGTTCATGTCACTCACTACTCAAATATTCTCTCTACTCCACTCT  304

Query  243  ATCCATTTGGATTCTCAA-CCGAAGATGCTGTCAGATCTCATATTATTCATTTCTCaaaa  301
            ||  ||| |||||| ||  ||||||  ||| ||| ||||||| | | || ||||||||  
Sbjct  305  ATGGATTCGGATTC-CATGCCGAAGCCGCTCTCAAATCTCATCTCACTCCTTTCTCAAGG  363

Query  302  aaaCTTTGAGCATT-T-C-GACTTCAGCTTAA-CGTTCAGTCGAAC-ATTGGCACTCGAG  356
            ||||||||| |||  | | |||||||| |||  | ||| ||| ||| || ||||||||||
Sbjct  364  AAACTTTGACCATAATACCGACTTCAGGTTATTCTTTC-GTCAAACTAT-GGCACTCGAG  421

Query  357  CCGGAGCCGGCTATC-ATGTCACTCATATTTCAAATATTCTCCCTCGTCATCTCCATGAA  415
            || |||||   |||  ||||||||||| | ||||||||||||||| || || || |||||
Sbjct  422  CCAGAGCCAA-TATTTATGTCACTCATCTATCAAATATTCTCCCTAGTAATATCTATGAA  480

Query  416  T-CTTAAGAGAGAGAAGCTTATTTCCTTATGTCCTCAAGCAT  456
            | || ||||| || ||||||||||||||||||||||||||||
Sbjct  481  TACT-AAGAGGGATAAGCTTATTTCCTTATGTCCTCAAGCAT  521


 Score =  279 bits (151),  Expect = 2e-74
 Identities = 232/270 (86%), Gaps = 10/270 (4%)
 Strand=Plus/Plus

Query  493  AAGCTATCTCGTATAGTATAGATAGCAAGTGGGAGTGTCTTCCTTTAAACTGGAAGACAT  552
            |||| ||| |||  |||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct  594  AAGCAATCCCGTGGAGTAGAGATAGCAAGTGGGAATGTCTTCCTTTTAACTGGAAGACAT  653

Query  553  ACTGGCCTACAGGAGAAGGCATTAC-CTATTTTCGATGTAGAAATTGCGAAGGCCG-GAA  610
            | ||| |||  ||||| |   |||| | ||||||||||  |||| ||||| || ||  ||
Sbjct  654  ATTGGTCTAGTGGAGATGATGTTACAC-ATTTTCGATGCCGAAACTGCGATGG-CGACAA  711

Query  611  CCATAAAGAATAT-AACAAGGCTCCGGTAGAGATCAAACACTCTCTTCATCGGAAACATT  669
            ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  712  CCATAAAGAATATGAA-AAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATT  770

Query  670  CTCTTCAGCTTGTCTTGTT--ATGTGAGGAAAATTATACGAGGGTTTGCTATTGCTGTGA  727
            |||||||||||||||||||  ||| ||| |   |||||||||||| |||||||| || ||
Sbjct  771  CTCTTCAGCTTGTCTTGTTGGATGAGAGTAG--TTATACGAGGGTATGCTATTGTTGCGA  828

Query  728  TGAAGATCTCAGAAGGATGTTTTATTATTG  757
            ||||||||||| ||||||||||||||||||
Sbjct  829  TGAAGATCTCAAAAGGATGTTTTATTATTG  858


 Score = 62.1 bits (33),  Expect = 8e-09
 Identities = 38/40 (95%), Gaps = 2/40 (5%)
 Strand=Plus/Plus

Query  761  ACCAACCGAAGTGGCATGAGCATACACTTGC-TCTGTTTC  799
            ||||||||||||||||||||||||||||||| | ||||||
Sbjct  921  ACCAACCGAAGTGGCATGAGCATACACTTGCGT-TGTTTC  959


> AT5G48320.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr5:19581705-19584748 REVERSE LENGTH=3044
Length=3044

 Score = 62.1 bits (33),  Expect = 8e-09
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  761   ACCAACCGAAGTGGCATGAGCATACACTTGCTC  793
             |||||||||||||||||||||||||||||||||
Sbjct  1643  ACCAACCGAAGTGGCATGAGCATACACTTGCTC  1675



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38881229778


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5