BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952123
Length=242
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07190.1 | Symbols: | B-cell receptor-associated protein 31... 311 2e-84
> AT3G07190.1 | Symbols: | B-cell receptor-associated protein
31-like | chr3:2285777-2287447 REVERSE LENGTH=1157
Length=1157
Score = 311 bits (168), Expect = 2e-84
Identities = 200/215 (93%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 27 TTCTTTCTCTTTGGCTTCCTTCTCT-GCTTTCTTCAGATTCTCTGAAACACAGGACAGCT 85
|||||||||||||| |||||||||| | |||||| ||||||||||||||||| ||||| |
Sbjct 817 TTCTTTCTCTTTGGATTCCTTCTCTAG-TTTCTTGAGATTCTCTGAAACACACGACAGTT 759
Query 86 TTTCTTTCAGCTGCTTAATCTCCTTGGATGtcttctcttctttcct-cttcagttcggtt 144
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||
Sbjct 758 TTTCTTTCAGCTGCTTAATTTCCTTGGATGTCTTCTCTTCTTT-CTCCTTCAGTTCGATT 700
Query 145 ctctccttcctaagttgttcgagttctcctttcGATGACCCGACATTGCTTCTTAAAGTG 204
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 699 CTCTCCTTCCTAAGTTCTTCTAGTTCTCCTTTCGATGACCCGACATTGCTTCTTAAAGTG 640
Query 205 ATTAGCTTTTCGAGGTAATGATGCGTTCAGTCAAT 239
||||||||||||||||||||||| || | ||||||
Sbjct 639 ATTAGCTTTTCGAGGTAATGATGTGTCCGGTCAAT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10958369282
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5