BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952125
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45630.2 | Symbols: | D-isomer specific 2-hydroxyacid dehyd... 512 1e-144
AT5G28463.1 | Symbols: | unknown protein; Has 30201 Blast hits... 206 2e-52
> AT2G45630.2 | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase
family protein | chr2:18796000-18797089 FORWARD LENGTH=1017
Length=1017
Score = 512 bits (277), Expect = 1e-144
Identities = 329/355 (93%), Gaps = 0/355 (0%)
Strand=Plus/Plus
Query 49 GCAACGATGACGACGAGCTCTTCCACCGAGAATCTTCCACGTGTCCTCATCGTCAAACGT 108
||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 28 GCAACGATGGCGACGAGCTCTTCCACCGAGAAACTGCCACGTGTCCTCATCGTCAAACGT 87
Query 109 CCCGCCGCCATGGATGTGTTCGGCGACAGATTCGTGGCCTCCACCAAGTTTGAGATCTTG 168
|||| |||||||| |||||| |||||| ||||||| |||||||||||||| |||||| |
Sbjct 88 CCCGACGCCATGGCTGTGTTAGGCGACGGATTCGTCGCCTCCACCAAGTTCGAGATCCTC 147
Query 169 AAAGCCTTCGAGTTTCCGCTTCCTCTCCCTGAATTCTTGGCCAATCACTCTGACTCCGTC 228
||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 148 AAAGCCTTCGAGTCTCCGCTTCCTCTTCCTGAATTCTTGGCCTATCACTCTGACTCCATC 207
Query 229 TCCGCCGTTATAGCCCCTGTAGCTGCTCCCGTCACAGCCGATCTGATTCGCCTCCTCCCG 288
|||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 208 TCCGCCATTATAGCCCCTGTAGCTGCTCCGGTCACAGCCGATCTGATTCGCATCCTCCCT 267
Query 289 AATCTTCGCTTGGTTGGTACTACCAGCGCCGGTGTTGACCACGTCGACTTAGTTGAGTGT 348
|||||||||||||||| ||||||||||||||| |||||||| || |||||||||||||||
Sbjct 268 AATCTTCGCTTGGTTGTTACTACCAGCGCCGGCGTTGACCATGTTGACTTAGTTGAGTGT 327
Query 349 CGTCATCGAGGCATCTCCGTCGCCAACGCAGGCTCAAGCTTCTCCGAAGATGTCG 403
|||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 328 CGTCGTCGAGGCATCTCCGTCGCCAACGCTGGCTCAAGCTTCTCGGAAGATGTCG 382
> AT5G28463.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:10379446-10380973
FORWARD LENGTH=1121
Length=1121
Score = 206 bits (111), Expect = 2e-52
Identities = 154/175 (88%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 114 CGCCATGGATGTGTTCGGCGACAGATTCGTGGCCTCCACCAAGTTTGAGATCTTGAAAGC 173
|||||||| ||||||||||||| |||| || ||||||||||||||||||||| | |||||
Sbjct 238 CGCCATGGCTGTGTTCGGCGACGGATTTGTCGCCTCCACCAAGTTTGAGATCCTCAAAGC 179
Query 174 CTTCGAGT-TTCCGCTTCCTCTCCCTGAATTCTTGGCCAATCACTCTGACTCCGTCTCCG 232
||| || | || | ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 CTTTGACTCTT-AGTTTCTTCTGCCTGAATTCTTGGCCAATCACTCTGACTCCGTCTCCG 120
Query 233 CCGTTATAGCCCCTGTAGCTGCTCCCGTCACAGCCGATCTGATTCGCCTCCTCCC 287
|| ||||||||| |||| |||||| |||||| || |||||| |||||||||||||
Sbjct 119 CCATTATAGCCCTTGTACCTGCTCTCGTCACTGCAGATCTGTTTCGCCTCCTCCC 65
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5