BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952137

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47870.1 | Symbols:  | Thioredoxin superfamily protein | chr...   488    1e-137


> AT2G47870.1 | Symbols:  | Thioredoxin superfamily protein | chr2:19603339-19603650 
FORWARD LENGTH=312
Length=312

 Score =  488 bits (264),  Expect = 1e-137
 Identities = 296/312 (95%), Gaps = 0/312 (0%)
 Strand=Plus/Plus

Query  22   ATGGAACGAGTAAGAGATTTGGCATCGAAGAAGGCGGCAGTGATATTCACGAAGAGCTCG  81
            ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct  1    ATGGAACGAGTAAGAGATTTGGCATCGGAGAAGGCGGCTGTGATATTCACGAAGAGCTCG  60

Query  82   TGTTGCATGTGTCATAGCATTAAGACCCTCTTCTACGAGCTCGGGGCAAGTCCTGCGATC  141
            |||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||
Sbjct  61   TGTTGCATGTGTCATAGCATCAAGACTCTCTTCTACGAACTCGGGGCGAGTCCTGCCATC  120

Query  142  CATGAGCTTGACAAGGACCCACAAGGCCGTGACATGGAACGGGCCCTCTTCCGGGTATTT  201
            |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| 
Sbjct  121  CATGAGCTTGACAAGGACCCGCAAGGCCCTGACATGGAACGGGCCCTCTTCCGGGTATTC  180

Query  202  GGGTCCAACCCTGCTGTCCCAGCGGTTTTCGTAGGAGGGAGGTACGTCGGCTCAGCTAAA  261
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  181  GGGTCTAACCCTGCTGTCCCTGCGGTTTTCGTAGGAGGAAGGTACGTCGGCTCAGCTAAA  240

Query  262  GACGTCATCTCCTTCCACGTGGATGGCTCTCTCAAGCAGATGTTAAAGGACTCTAAAGCC  321
            ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct  241  GACGTCATCTCCTTCCACGTGGATGGCTCCCTCAAGCAGATGTTAAAGGCCTCTAACGCC  300

Query  322  ATATGGTTGTGA  333
            ||||||||||||
Sbjct  301  ATATGGTTGTGA  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16588357170


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5