BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952138

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47880.1 | Symbols:  | Glutaredoxin family protein | chr2:19...   603    5e-172
  AT2G30540.1 | Symbols:  | Thioredoxin superfamily protein | chr...   189    1e-47 


> AT2G47880.1 | Symbols:  | Glutaredoxin family protein | chr2:19605040-19605671 
FORWARD LENGTH=632
Length=632

 Score =  603 bits (326),  Expect = 5e-172
 Identities = 343/351 (98%), Gaps = 1/351 (0%)
 Strand=Plus/Plus

Query  1    TCTTCAGATTTCTGAGGATCATGGACAAGGTGATGAGAATGTCGTCAGAGAAAGGAGTGG  60
            |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  65   TCTTCAGACTTCTGAGGATCATGGACAAAGTGATGAGAATGTCTTCAGAGAAAGGAGTGG  124

Query  61   TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAGATCCTGTTCCGTGACC  120
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  125  TGATCTTCACGAAGAGCTCATGTTGTCTCTGCTACGCCGTTCAAATCCTGTTCCGTGACC  184

Query  121  TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  TTAGGGTTCAACCAACCATCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGA  244

Query  181  AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  AGGCTCTTCTCCGGCTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGC  304

Query  241  TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTCGTCCCCTTGA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct  305  TTGTTGGCTCCACCAATGAAGTCATGTCCCTTCACCTTAGTGGCTCTCTTGTCCCATTGA  364

Query  301  TCAAACCCTATCAGTCCATCCTTTACTAGCAAA-TCAAACCAACTCAATAT  350
            ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  365  TCAAACCCTATCAGTCCATCCTTTACTAGCAAAATTAAACCAACTCAATAT  415


> AT2G30540.1 | Symbols:  | Thioredoxin superfamily protein | chr2:13011105-13011784 
REVERSE LENGTH=680
Length=680

 Score =  189 bits (102),  Expect = 1e-47
 Identities = 218/273 (80%), Gaps = 12/273 (4%)
 Strand=Plus/Plus

Query  20   CATGGAC-AAGGTGATGAGAATGTCGTCAGAGAAAGGAGTGGTGATCTTCA-CGAAGAGC  77
            ||||||| ||| || |||||||||||||||||||||||||||| || |||| | ||||||
Sbjct  217  CATGGACAAAGTTG-TGAGAATGTCGTCAGAGAAAGGAGTGGTTATTTTCAGC-AAGAGC  274

Query  78   TCATGTTGTC-TCTGCTACGCCGTTCA-GATCCTGTTCCGTGACCTTAGGGTTCAACCAA  135
            || ||||| | | | ||| || || || | | || ||||  |||||| ||||||| ||||
Sbjct  275  TCGTGTTG-CATGTCCTATGCGGTCCAAG-TACTTTTCCAAGACCTTGGGGTTCACCCAA  332

Query  136  CCA-TCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGAAGGCTCTTCTCCGG  194
            | | |||| |||||||| || ||||| || || |||||||||||||| || ||  |  ||
Sbjct  333  C-AGTCCATGAGATCGATAAAGACCCTGAATGTCGTGAGATCGAGAAAGCCCTAATGAGG  391

Query  195  CTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGCTTGTTGGCTCCACC  254
             | || ||||||||| |||| |||||  ||||||| || || |||||  |||| || |||
Sbjct  392  TTAGGGTGTTCCACGCCGGTCCCAGCCATCTTTGTGGGTGGGAAGCTCATTGGTTCGACC  451

Query  255  AATGAAGTCATGTCCCTTCACCTTA-GTGGCTC  286
            |||||||||||||| |||||| ||| | |||||
Sbjct  452  AATGAAGTCATGTCGCTTCAC-TTAAGCGGCTC  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16387286174


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5