BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952154

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51950.1 | Symbols:  | Glucose-methanol-choline (GMC) oxidor...   292    7e-79


> AT5G51950.1 | Symbols:  | Glucose-methanol-choline (GMC) oxidoreductase 
family protein | chr5:21105909-21108605 REVERSE LENGTH=1991
Length=1991

 Score =  292 bits (158),  Expect = 7e-79
 Identities = 183/195 (94%), Gaps = 2/195 (1%)
 Strand=Plus/Plus

Query  1    AACTTAATCTTTCACCCATAATGGGTTTACAAAGATTATGGTTATTTCGCATAATTTTCA  60
            ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct  27   AACTTAATCTTTCACCCATAATGGGTTTACAAATATTATGGTTATTTCGCAAAATATTCA  86

Query  61   TCGTAACATACATCTCCCATGCCTCGTGTT-TGCCAGATAAAGCTGGCTATTACAGTTTT  119
            || | |||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct  87   TCATCACATACATCTTCCATGCCTCGTGTTCT-CCAGATAAAGCTGGCTATTACAGTTTT  145

Query  120  ATGAAAGATGCAACATCGGCACCAATGTTCGCTCGGTTTGATTACATAGTCATCGGAGGA  179
            ||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||
Sbjct  146  ATGAAAGATGCAACATTAGCACCAATGTTCGCTCGGTTTGATTACATAATCATCGGAGGA  205

Query  180  GGAACTTCGGGTTGC  194
            || ||||||||||||
Sbjct  206  GGGACTTCGGGTTGC  220



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9852478804


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5