BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952155 Length=1361 Score E Sequences producing significant alignments: (Bits) Value AT5G51930.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 774 0.0 AT5G51950.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 420 2e-116 > AT5G51930.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr5:21101123-21103568 FORWARD LENGTH=1749 Length=1749 Score = 774 bits (419), Expect = 0.0 Identities = 1016/1292 (79%), Gaps = 90/1292 (7%) Strand=Plus/Plus Query 1 GTGGA-GAAGTCTGAGTGGGAGATGGAGGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAA 59 ||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 499 GTGGAGGAAG-CTGAGTGGGAGATGGAAGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAA 557 Query 60 GAAATTTGTGTTCAAGCCACTAGTGATGGGATGGCAATCGGCATTGAGAGATGGGCTTTT 119 |||| |||||||| |||||| ||| || | ||||||| ||| || | |||||||||| | Sbjct 558 GAAACTTGTGTTCGAGCCACAAGTAATAGAATGGCAAAAGGCGTTTAAAGATGGGCTTCT 617 Query 120 GGAAGCTGGGGTGGT-TCCATACAATGGTTTCACGTTCGATCATATCGT-TGGGACTAAG 177 ||| ||||| | || ||| |||| |||||||||| |||||||||| | || |||||| Sbjct 618 GGAGGCTGGAG-AGTCTCCGGACAACGGTTTCACGTACGATCATATC-TACGGCACTAAG 675 Query 178 ATTGGCGGTACAATCTTTGACCCCGCGGGCCATAGACATTCGGCTGCAAATCTGTTAGAG 237 || || |||||||||||||||| || || ||||||||| | || || |||||||||||| Sbjct 676 ATCGGTGGTACAATCTTTGACCGTGCTGGTCATAGACATACCGCGGCGAATCTGTTAGAG 735 Query 238 TATGCTAA-CCCGGACAC-GATTGTTGTTTACTTGCACGC-TCTTGTTCACAAAATCCTC 294 |||||||| ||| || | |||||||||||||||||| || || |||||||||| ||||| Sbjct 736 TATGCTAATCCC-AAC-CGGATTGTTGTTTACTTGCATGCTTC-TGTTCACAAAGTCCTC 792 Query 295 TTCACCACTAAAGGAAGATCGAGGCCTAAGGCGTGTGGAGTTATATATCAAGACGCAAAT 354 |||||||| | | || |||| || ||| ||| | | || |||||| Sbjct 793 TTCACCAC-----------C---G---AA-GCGTATGAAGTGCTATTTGAGGATGCAAAT 834 Query 355 GGAGTGTTTCACAAGGTAAAACTGGCGAAA-AACGCAATGAGCGAGGTGATTTTGTGTGC 413 |||||||| ||||||| ||| || || ||| || |||| || ||| ||||| |||| || Sbjct 835 GGAGTGTTCCACAAGGCAAATCTAGC-AAATAAGGCAACGAACGAAGTGATCTTGTCAGC 893 Query 414 GGGCGCCATCGGG-AGCCCGCAGCTACTGATGCTGAGTGGTGTGGGTCCT-AAGTCCCAT 471 || ||| | ||| ||||| || ||| | ||| ||||||| || |||||| || |||| Sbjct 894 TGGAGCCCT-GGGTAGCCCACAACTATTAATGTTGAGTGGAGTAGGTCCTGCCGT-CCAT 951 Query 472 CTTGAGGCCCATGGGGTCG-A-TC-C-GGTCATCGATCAACCCATGGTTGGGCAAGGGAT 527 |||||||| || || || | | | | ||| | ||||| |||||||||||||| ||||| Sbjct 952 CTTGAGGCTCACGGCGT-GAACCCACTCGTCCTAGATCAGCCCATGGTTGGGCAGGGGAT 1010 Query 528 GGGAGATAATCCAATGAACCTTGT-CCTCGTCCCTTCTCCTCAACTTGTAGAACTGTCCC 586 || |||||||| |||||| |||| | | | ||||||||||||| |||||||| |||| Sbjct 1011 GGCTGATAATCCCATGAACTTTGTAGC-CATTCCTTCTCCTCAACCAGTAGAACTATCCC 1069 Query 587 TCGTA-GAGGTCGTTGGTATCACCAAGTTTTATGA-TTTCATTGAAGGTGGAAGTGGCTT 644 || || || | ||||| ||||| |||||| || | || |||||||||| ||||||||| Sbjct 1070 TCATACAAGCT-GTTGGGATCACAAAGTTTGAT-AGTTACATTGAAGGTCTAAGTGGCTT 1127 Query 645 AAGCCTCTCTCAAAACT-TGACCCGTAGGTTCTTAGATAGTAATTTGAATATTCT---C- 699 || |||||| | | | || |||||||| || ||| || ||||||| || | | Sbjct 1128 GAGTCTCTCTTTTGA-TATAACTCGTAGGTTTTTCGATGGTGTTTTGAATCTTTTAAACG 1186 Query 700 A-AC--G--AGAC-AC-TC--------TCC--ACCCAGTCAATCGTAG-ACTTCTTCAAA 741 | || | | || || || ||| ||||| || || | || ||| || ||| Sbjct 1187 AGACAAGTCATACTACATCTAGGAAAATCCTGACCCAATCCATTGCAGTCCTT-TTAAAA 1245 Query 742 TCCTTGGATCTTCCATT-GAACATGATGGA-AAATGCGGGCTTGATCTTCCACAAAGTCG 799 || || ||| || ||| ||| ||| ||| |||| ||| |||||||| || ||||||| Sbjct 1246 TCTTTTGATGTTAAATTGGAA-GTGA-GGATGAATGGGGGTTTGATCTTTCAAAAAGTCG 1303 Query 800 ATGGACCAGTCTCAAGAGGATACCTA-GAA-CTCCGGAACAAAAACCCGGA-TGAGAACC 856 ||||||| | ||||| ||| || || ||| || ||||||| ||||| | || || | Sbjct 1304 ATGGACCGGCCTCAAAAGG--ACATATGAAGCTACGGAACACGAACCC-AAGGGATAATC 1360 Query 857 CTTCAGTGACATTCAATTACTACCAAGAACCAGAAGATCTTGAA-AGGTGTGTTAAAGGA 915 |||||||||||||||| ||||| ||||||||||| ||| ||||| | |||||||||||| Sbjct 1361 CTTCAGTGACATTCAACTACTATCAAGAACCAGAGGAT-TTGAACAAGTGTGTTAAAGGG 1419 Query 916 CTTAATACCATTATTA-AAGTGATAAAATCGAAGGCCTTCTTGAAGTACAAGTACCCGAA 974 ||||| |||||||||| || ||||||| || || || |||| ||||||||||| ||| Sbjct 1420 CTTAACACCATTATTAGAA-TGATAAATTCCAAAGCTTTCTCCAAGTACAAGTATCCGGG 1478 Query 975 TGAGACCGTACGCGGACTACTCAATCGCACGCTTAG-CCTTCCTATCAATCTAAGGCCAA 1033 || ||| | ||| | ||| ||||||| || | || | |||||| |||||| | ||||||| Sbjct 1479 TGTGACGGCACGTGAACTGCTCAATCTCATG-TTGGCCCTTCCCATCAATTTGAGGCCAA 1537 Query 1034 AACACGTCTCCTCGA-AGTCCAACTTGACGCAGTTTTGCATAGACACTGTGATGACTATT 1092 ||||| |||| | || |||||||| |||||||||||| ||||| |||| || | || Sbjct 1538 GGCACGTGACCTC-AGCGTTCAACTTGAAGCAGTTTTGCATCGACACCGTGACGAGTGTT 1596 Query 1093 TGGCATTACCATGGAGGTTGCCAAGTTGGAAGAGTGGTTGACAAGAATTACAAAGTCTTA 1152 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1597 TGGCATTACCATGGAGGTTGCCAAGTTGGAAAAGTGGTTGACAAGAATTACAAAGTCTTA 1656 Query 1153 GGTATTGATGCCTTAAGGGTCATCGATGGATCCACATTTCTCAAGTCTCCAGGGACCAAT 1212 || || |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1657 GGCATAGATGGCTTAAGGGTCATCGATGGATCCACATTTCTCAAGTCTCCCGGGACTAAT 1716 Query 1213 CCACAAGCAACGGTCATGATGCTCGGAAGGTA 1244 || ||||| |||||||||||||| |||||||| Sbjct 1717 CCTCAAGCCACGGTCATGATGCTTGGAAGGTA 1748 > AT5G51950.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr5:21105909-21108605 REVERSE LENGTH=1991 Length=1991 Score = 420 bits (227), Expect = 2e-116 Identities = 406/494 (82%), Gaps = 6/494 (1%) Strand=Plus/Plus Query 781 TTGATCTTCCACAAAGTCGATGGACCAG-TCTCAAGAGGAT-ACCTAGAACTCCGGAACA 838 |||||| |||| ||| ||| ||||| | |||| ||||| | | |||| || |||||| Sbjct 1283 TTGATCCTCCAGAAAATCGCGGGACC-GATCTCGAGAGG-TCATTTAGAGCTTAGGAACA 1340 Query 839 AAAACCCGGATGAGAACCCTTCAGTGACATTCAATTACTACCAAGAACCAGAAGATCTTG 898 |||||||||||| || |||||||| | ||||| || || ||||| ||||| ||||| Sbjct 1341 CAAACCCGGATGATAATCCTTCAGTAAGGTTCAACTATTATCAAGAGCCAGAGGATCTAC 1400 Query 899 AAAGGTGTGTT-AAAGGACTTAATACCATTATTAAAGTGATAAAATCGAAGGCCTTCTTG 957 | | |||||| || ||| | || ||||||||||||||||| || || ||||| |||| Sbjct 1401 AGATATGTGTTGAAGGGA-TCAACACCATTATTAAAGTGATCAACTCCAAGGCATTCTCC 1459 Query 958 AAGTACAAGTACCCGAATGAGACCGTACGCGGACTACTCAATCGCACGCTTAGCCTTCCT 1017 || | |||||||||| | | |||| ||| ||||||||| ||| | ||| ||| ||||| Sbjct 1460 AAATTCAAGTACCCGGACGCGACCATACATGGACTACTCGATCTAATGCTAAGCGTTCCT 1519 Query 1018 ATCAATCTAAGGCCAAAACACGTCTCCTCGAAGTCCAACTTGACGCAGTTTTGCATAGAC 1077 | |||||| ||||| || | |||||| || ||| || | |||||||||||| ||| Sbjct 1520 ACCAATCTGAGGCCGCGGCATATAACCTCGATGTTCAATTTAAGGCAGTTTTGCATTGAC 1579 Query 1078 ACTGTGATGACTATTTGGCATTACCATGGAGGTTGCCAAGTTGGAAGAGTGGTTGACAAG 1137 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1580 ACTGTGATGACAATTTGGCACTACCATGGAGGTTGCCAAGTTGGAAGAGTGGTTGACAAG 1639 Query 1138 AATTACAAAGTCTTAGGTATTGATGCCTTAAGGGTCATCGATGGATCCACATTTCTCAAG 1197 ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1640 AATTACAGAGTCTTAGGCATTGATTCCTTAAGGGTCATCGATGGATCCACATTTCTCAAG 1699 Query 1198 TCTCCAGGGACCAATCCACAAGCAACGGTCATGATGCTCGGAAGGTACGTGGGGCAAAAG 1257 ||||| ||||| ||||| ||||| || || ||||||||||||||||| |||| |||| | Sbjct 1700 TCTCCGGGGACTAATCCTCAAGCTACTGTTATGATGCTCGGAAGGTATATGGGCCAAAGG 1759 Query 1258 ATTCTTCGAGAGAG 1271 ||||||| |||||| Sbjct 1760 ATTCTTCAAGAGAG 1773 Score = 392 bits (212), Expect = 4e-108 Identities = 559/724 (77%), Gaps = 33/724 (5%) Strand=Plus/Plus Query 1 GTGGAGAAGTCTGAGTGGGAGA-TGGAGGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAA 59 ||| || || |||||||| ||| | || |||||||||||||||||||||||||||||||| Sbjct 464 GTGAAGGAGACTGAGTGGAAGACT-GATGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAA 522 Query 60 GAAATTTGTGTT-CAAGCCACTAGTGATGGGATGGCAATCGGCATTGAGAGATGGGCTTT 118 |||| | | ||| ||| || | || ||||||||||| |||| || | ||||||||||| Sbjct 523 GAAAGTGGCGTTTCAA-CCGCCGGTTCTGGGATGGCAAACGGCGTTTAAAGATGGGCTTT 581 Query 119 TGGAAGCTGGGGTGGTTCCATACAATGGTTTCACGT-TCGATCATATCGT-TGGGACTAA 176 |||| ||||| | | |||| |||||||||||||||| | ||||||||| | ||||||||| Sbjct 582 TGGAGGCTGGTGAGTTTCCTTACAATGGTTTCACGTAT-GATCATATC-TATGGGACTAA 639 Query 177 GATTGGCGGTACAATCTTTGACCCCGCGGGCCATAGACATTCGGCTGCAAATCTGTTAGA 236 ||| || ||||| |||||||||| || || |||||||| |||| || || |||| || Sbjct 640 GATCGGTGGTACGATCTTTGACCGTGCTGGTCATAGACACACGGCCGCTGATTTGTTGGA 699 Query 237 GTATGCTAACCCGGACA-CGATTGTTGTTTACTTGCACGC-TCTTGTTCACAAAATCCTC 294 |||||||| |||| || | |||||||| |||||||| || ||| |||||||| |||||| Sbjct 700 ATATGCTAATCCGGGCAAC-ATTGTTGTCTACTTGCATGCCTCT-GTTCACAAGATCCTC 757 Query 295 TTCACCACTAAAGGAAGATCGAGGCCTAAGGCGTGTGGAGTTATATATCAAGACGCAAAT 354 |||||||| |||||||| | ||||| || || | ||||| |||| ||||||||| || Sbjct 758 TTCACCACCAAAGGAAGGCCAAGGCCAAAAGCATACGGAGTGATATTTCAAGACGCGAAC 817 Query 355 GGAGTGTTTCACAAGGTAAAACTGGCGAAAAACGCAATGAGCGAGGTGATTTTGTGTGCG 414 |||||||| ||||||| | | | | ||| || |||||| |||||||||||||| ||| Sbjct 818 GGAGTGTTACACAAGGCAGAGTTAGAGAAGAATTCAATGAACGAGGTGATTTTGTCCGCG 877 Query 415 GGCGCCATCGGGAGCCCGCAGCTACTGATGCTGAGTGGTGTGGGTCCTA-AGTCCCATCT 473 || || || ||||||||||| | |||||||||| || | ||||| || | ||||| Sbjct 878 GGGGCGATTGGGAGCCCGCAATTGTTGATGCTGAGCGGCATAGGTCCCGCAG-CTCATCT 936 Query 474 TGAGGCCCATGGGGTCGATCCG--G-TCATCGATCAACCCATGGTTGGGCAAGGGATGGG 530 | ||| || ||| | | ||| | || | ||||| || ||||| |||||||| ||||| Sbjct 937 CGCGGCTCACGGGATTAAACCGTTGGTCTTAGATCATCCGATGGTAGGGCAAGGTATGGG 996 Query 531 AGATAATCCAATGAA--CCTTGTCCTCGTCCCTTCTCCT-CAACTTGTAGAACTGTCCCT 587 ||||||||| ||||| || | | | ||| ||||||| | | || || | || || Sbjct 997 AGATAATCCCATGAATGCCATATT-TATTCC-TTCTCCTACGCCC-GTGGAGGTTTCTCT 1053 Query 588 CGTAGAGGTCGTTGGTATCACCAAGTTTTATGATTT-CATTGAAGGTGGAAGTGGCT-TA 645 || | |||||||| ||||| |||||| | | || ||| ||||| | |||||| | || Sbjct 1054 AATACAAGTCGTTGGAATCACAAAGTTTGAA-AGTTACATAGAAGGAGCAAGTGG-TGTA 1111 Query 646 AGCCTCTCTCAAA-ACTTG-ACCCGTAGGTTCTTAGATAGTAATTTGAAT-ATTCTCAAC 702 | | | ||||| | | ||| || ||||| || || ||| || ||||||| || |||||| Sbjct 1112 ATC-T-TCTCATATAGTTGGACTCGTAGATTTTTCGATGGTGTTTTGAATTAT-CTCAAC 1168 Query 703 GAGA 706 |||| Sbjct 1169 GAGA 1172 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67017727575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5