BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952155
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51930.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 774 0.0
AT5G51950.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 420 2e-116
> AT5G51930.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase
family protein | chr5:21101123-21103568 FORWARD LENGTH=1749
Length=1749
Score = 774 bits (419), Expect = 0.0
Identities = 1016/1292 (79%), Gaps = 90/1292 (7%)
Strand=Plus/Plus
Query 1 GTGGA-GAAGTCTGAGTGGGAGATGGAGGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAA 59
||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 499 GTGGAGGAAG-CTGAGTGGGAGATGGAAGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAA 557
Query 60 GAAATTTGTGTTCAAGCCACTAGTGATGGGATGGCAATCGGCATTGAGAGATGGGCTTTT 119
|||| |||||||| |||||| ||| || | ||||||| ||| || | |||||||||| |
Sbjct 558 GAAACTTGTGTTCGAGCCACAAGTAATAGAATGGCAAAAGGCGTTTAAAGATGGGCTTCT 617
Query 120 GGAAGCTGGGGTGGT-TCCATACAATGGTTTCACGTTCGATCATATCGT-TGGGACTAAG 177
||| ||||| | || ||| |||| |||||||||| |||||||||| | || ||||||
Sbjct 618 GGAGGCTGGAG-AGTCTCCGGACAACGGTTTCACGTACGATCATATC-TACGGCACTAAG 675
Query 178 ATTGGCGGTACAATCTTTGACCCCGCGGGCCATAGACATTCGGCTGCAAATCTGTTAGAG 237
|| || |||||||||||||||| || || ||||||||| | || || ||||||||||||
Sbjct 676 ATCGGTGGTACAATCTTTGACCGTGCTGGTCATAGACATACCGCGGCGAATCTGTTAGAG 735
Query 238 TATGCTAA-CCCGGACAC-GATTGTTGTTTACTTGCACGC-TCTTGTTCACAAAATCCTC 294
|||||||| ||| || | |||||||||||||||||| || || |||||||||| |||||
Sbjct 736 TATGCTAATCCC-AAC-CGGATTGTTGTTTACTTGCATGCTTC-TGTTCACAAAGTCCTC 792
Query 295 TTCACCACTAAAGGAAGATCGAGGCCTAAGGCGTGTGGAGTTATATATCAAGACGCAAAT 354
|||||||| | | || |||| || ||| ||| | | || ||||||
Sbjct 793 TTCACCAC-----------C---G---AA-GCGTATGAAGTGCTATTTGAGGATGCAAAT 834
Query 355 GGAGTGTTTCACAAGGTAAAACTGGCGAAA-AACGCAATGAGCGAGGTGATTTTGTGTGC 413
|||||||| ||||||| ||| || || ||| || |||| || ||| ||||| |||| ||
Sbjct 835 GGAGTGTTCCACAAGGCAAATCTAGC-AAATAAGGCAACGAACGAAGTGATCTTGTCAGC 893
Query 414 GGGCGCCATCGGG-AGCCCGCAGCTACTGATGCTGAGTGGTGTGGGTCCT-AAGTCCCAT 471
|| ||| | ||| ||||| || ||| | ||| ||||||| || |||||| || ||||
Sbjct 894 TGGAGCCCT-GGGTAGCCCACAACTATTAATGTTGAGTGGAGTAGGTCCTGCCGT-CCAT 951
Query 472 CTTGAGGCCCATGGGGTCG-A-TC-C-GGTCATCGATCAACCCATGGTTGGGCAAGGGAT 527
|||||||| || || || | | | | ||| | ||||| |||||||||||||| |||||
Sbjct 952 CTTGAGGCTCACGGCGT-GAACCCACTCGTCCTAGATCAGCCCATGGTTGGGCAGGGGAT 1010
Query 528 GGGAGATAATCCAATGAACCTTGT-CCTCGTCCCTTCTCCTCAACTTGTAGAACTGTCCC 586
|| |||||||| |||||| |||| | | | ||||||||||||| |||||||| ||||
Sbjct 1011 GGCTGATAATCCCATGAACTTTGTAGC-CATTCCTTCTCCTCAACCAGTAGAACTATCCC 1069
Query 587 TCGTA-GAGGTCGTTGGTATCACCAAGTTTTATGA-TTTCATTGAAGGTGGAAGTGGCTT 644
|| || || | ||||| ||||| |||||| || | || |||||||||| |||||||||
Sbjct 1070 TCATACAAGCT-GTTGGGATCACAAAGTTTGAT-AGTTACATTGAAGGTCTAAGTGGCTT 1127
Query 645 AAGCCTCTCTCAAAACT-TGACCCGTAGGTTCTTAGATAGTAATTTGAATATTCT---C- 699
|| |||||| | | | || |||||||| || ||| || ||||||| || | |
Sbjct 1128 GAGTCTCTCTTTTGA-TATAACTCGTAGGTTTTTCGATGGTGTTTTGAATCTTTTAAACG 1186
Query 700 A-AC--G--AGAC-AC-TC--------TCC--ACCCAGTCAATCGTAG-ACTTCTTCAAA 741
| || | | || || || ||| ||||| || || | || ||| || |||
Sbjct 1187 AGACAAGTCATACTACATCTAGGAAAATCCTGACCCAATCCATTGCAGTCCTT-TTAAAA 1245
Query 742 TCCTTGGATCTTCCATT-GAACATGATGGA-AAATGCGGGCTTGATCTTCCACAAAGTCG 799
|| || ||| || ||| ||| ||| ||| |||| ||| |||||||| || |||||||
Sbjct 1246 TCTTTTGATGTTAAATTGGAA-GTGA-GGATGAATGGGGGTTTGATCTTTCAAAAAGTCG 1303
Query 800 ATGGACCAGTCTCAAGAGGATACCTA-GAA-CTCCGGAACAAAAACCCGGA-TGAGAACC 856
||||||| | ||||| ||| || || ||| || ||||||| ||||| | || || |
Sbjct 1304 ATGGACCGGCCTCAAAAGG--ACATATGAAGCTACGGAACACGAACCC-AAGGGATAATC 1360
Query 857 CTTCAGTGACATTCAATTACTACCAAGAACCAGAAGATCTTGAA-AGGTGTGTTAAAGGA 915
|||||||||||||||| ||||| ||||||||||| ||| ||||| | ||||||||||||
Sbjct 1361 CTTCAGTGACATTCAACTACTATCAAGAACCAGAGGAT-TTGAACAAGTGTGTTAAAGGG 1419
Query 916 CTTAATACCATTATTA-AAGTGATAAAATCGAAGGCCTTCTTGAAGTACAAGTACCCGAA 974
||||| |||||||||| || ||||||| || || || |||| ||||||||||| |||
Sbjct 1420 CTTAACACCATTATTAGAA-TGATAAATTCCAAAGCTTTCTCCAAGTACAAGTATCCGGG 1478
Query 975 TGAGACCGTACGCGGACTACTCAATCGCACGCTTAG-CCTTCCTATCAATCTAAGGCCAA 1033
|| ||| | ||| | ||| ||||||| || | || | |||||| |||||| | |||||||
Sbjct 1479 TGTGACGGCACGTGAACTGCTCAATCTCATG-TTGGCCCTTCCCATCAATTTGAGGCCAA 1537
Query 1034 AACACGTCTCCTCGA-AGTCCAACTTGACGCAGTTTTGCATAGACACTGTGATGACTATT 1092
||||| |||| | || |||||||| |||||||||||| ||||| |||| || | ||
Sbjct 1538 GGCACGTGACCTC-AGCGTTCAACTTGAAGCAGTTTTGCATCGACACCGTGACGAGTGTT 1596
Query 1093 TGGCATTACCATGGAGGTTGCCAAGTTGGAAGAGTGGTTGACAAGAATTACAAAGTCTTA 1152
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1597 TGGCATTACCATGGAGGTTGCCAAGTTGGAAAAGTGGTTGACAAGAATTACAAAGTCTTA 1656
Query 1153 GGTATTGATGCCTTAAGGGTCATCGATGGATCCACATTTCTCAAGTCTCCAGGGACCAAT 1212
|| || |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1657 GGCATAGATGGCTTAAGGGTCATCGATGGATCCACATTTCTCAAGTCTCCCGGGACTAAT 1716
Query 1213 CCACAAGCAACGGTCATGATGCTCGGAAGGTA 1244
|| ||||| |||||||||||||| ||||||||
Sbjct 1717 CCTCAAGCCACGGTCATGATGCTTGGAAGGTA 1748
> AT5G51950.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase
family protein | chr5:21105909-21108605 REVERSE LENGTH=1991
Length=1991
Score = 420 bits (227), Expect = 2e-116
Identities = 406/494 (82%), Gaps = 6/494 (1%)
Strand=Plus/Plus
Query 781 TTGATCTTCCACAAAGTCGATGGACCAG-TCTCAAGAGGAT-ACCTAGAACTCCGGAACA 838
|||||| |||| ||| ||| ||||| | |||| ||||| | | |||| || ||||||
Sbjct 1283 TTGATCCTCCAGAAAATCGCGGGACC-GATCTCGAGAGG-TCATTTAGAGCTTAGGAACA 1340
Query 839 AAAACCCGGATGAGAACCCTTCAGTGACATTCAATTACTACCAAGAACCAGAAGATCTTG 898
|||||||||||| || |||||||| | ||||| || || ||||| ||||| |||||
Sbjct 1341 CAAACCCGGATGATAATCCTTCAGTAAGGTTCAACTATTATCAAGAGCCAGAGGATCTAC 1400
Query 899 AAAGGTGTGTT-AAAGGACTTAATACCATTATTAAAGTGATAAAATCGAAGGCCTTCTTG 957
| | |||||| || ||| | || ||||||||||||||||| || || ||||| ||||
Sbjct 1401 AGATATGTGTTGAAGGGA-TCAACACCATTATTAAAGTGATCAACTCCAAGGCATTCTCC 1459
Query 958 AAGTACAAGTACCCGAATGAGACCGTACGCGGACTACTCAATCGCACGCTTAGCCTTCCT 1017
|| | |||||||||| | | |||| ||| ||||||||| ||| | ||| ||| |||||
Sbjct 1460 AAATTCAAGTACCCGGACGCGACCATACATGGACTACTCGATCTAATGCTAAGCGTTCCT 1519
Query 1018 ATCAATCTAAGGCCAAAACACGTCTCCTCGAAGTCCAACTTGACGCAGTTTTGCATAGAC 1077
| |||||| ||||| || | |||||| || ||| || | |||||||||||| |||
Sbjct 1520 ACCAATCTGAGGCCGCGGCATATAACCTCGATGTTCAATTTAAGGCAGTTTTGCATTGAC 1579
Query 1078 ACTGTGATGACTATTTGGCATTACCATGGAGGTTGCCAAGTTGGAAGAGTGGTTGACAAG 1137
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1580 ACTGTGATGACAATTTGGCACTACCATGGAGGTTGCCAAGTTGGAAGAGTGGTTGACAAG 1639
Query 1138 AATTACAAAGTCTTAGGTATTGATGCCTTAAGGGTCATCGATGGATCCACATTTCTCAAG 1197
||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1640 AATTACAGAGTCTTAGGCATTGATTCCTTAAGGGTCATCGATGGATCCACATTTCTCAAG 1699
Query 1198 TCTCCAGGGACCAATCCACAAGCAACGGTCATGATGCTCGGAAGGTACGTGGGGCAAAAG 1257
||||| ||||| ||||| ||||| || || ||||||||||||||||| |||| |||| |
Sbjct 1700 TCTCCGGGGACTAATCCTCAAGCTACTGTTATGATGCTCGGAAGGTATATGGGCCAAAGG 1759
Query 1258 ATTCTTCGAGAGAG 1271
||||||| ||||||
Sbjct 1760 ATTCTTCAAGAGAG 1773
Score = 392 bits (212), Expect = 4e-108
Identities = 559/724 (77%), Gaps = 33/724 (5%)
Strand=Plus/Plus
Query 1 GTGGAGAAGTCTGAGTGGGAGA-TGGAGGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAA 59
||| || || |||||||| ||| | || ||||||||||||||||||||||||||||||||
Sbjct 464 GTGAAGGAGACTGAGTGGAAGACT-GATGAAGTGGAAGCTGCTTACGAGTGGGTCGAGAA 522
Query 60 GAAATTTGTGTT-CAAGCCACTAGTGATGGGATGGCAATCGGCATTGAGAGATGGGCTTT 118
|||| | | ||| ||| || | || ||||||||||| |||| || | |||||||||||
Sbjct 523 GAAAGTGGCGTTTCAA-CCGCCGGTTCTGGGATGGCAAACGGCGTTTAAAGATGGGCTTT 581
Query 119 TGGAAGCTGGGGTGGTTCCATACAATGGTTTCACGT-TCGATCATATCGT-TGGGACTAA 176
|||| ||||| | | |||| |||||||||||||||| | ||||||||| | |||||||||
Sbjct 582 TGGAGGCTGGTGAGTTTCCTTACAATGGTTTCACGTAT-GATCATATC-TATGGGACTAA 639
Query 177 GATTGGCGGTACAATCTTTGACCCCGCGGGCCATAGACATTCGGCTGCAAATCTGTTAGA 236
||| || ||||| |||||||||| || || |||||||| |||| || || |||| ||
Sbjct 640 GATCGGTGGTACGATCTTTGACCGTGCTGGTCATAGACACACGGCCGCTGATTTGTTGGA 699
Query 237 GTATGCTAACCCGGACA-CGATTGTTGTTTACTTGCACGC-TCTTGTTCACAAAATCCTC 294
|||||||| |||| || | |||||||| |||||||| || ||| |||||||| ||||||
Sbjct 700 ATATGCTAATCCGGGCAAC-ATTGTTGTCTACTTGCATGCCTCT-GTTCACAAGATCCTC 757
Query 295 TTCACCACTAAAGGAAGATCGAGGCCTAAGGCGTGTGGAGTTATATATCAAGACGCAAAT 354
|||||||| |||||||| | ||||| || || | ||||| |||| ||||||||| ||
Sbjct 758 TTCACCACCAAAGGAAGGCCAAGGCCAAAAGCATACGGAGTGATATTTCAAGACGCGAAC 817
Query 355 GGAGTGTTTCACAAGGTAAAACTGGCGAAAAACGCAATGAGCGAGGTGATTTTGTGTGCG 414
|||||||| ||||||| | | | | ||| || |||||| |||||||||||||| |||
Sbjct 818 GGAGTGTTACACAAGGCAGAGTTAGAGAAGAATTCAATGAACGAGGTGATTTTGTCCGCG 877
Query 415 GGCGCCATCGGGAGCCCGCAGCTACTGATGCTGAGTGGTGTGGGTCCTA-AGTCCCATCT 473
|| || || ||||||||||| | |||||||||| || | ||||| || | |||||
Sbjct 878 GGGGCGATTGGGAGCCCGCAATTGTTGATGCTGAGCGGCATAGGTCCCGCAG-CTCATCT 936
Query 474 TGAGGCCCATGGGGTCGATCCG--G-TCATCGATCAACCCATGGTTGGGCAAGGGATGGG 530
| ||| || ||| | | ||| | || | ||||| || ||||| |||||||| |||||
Sbjct 937 CGCGGCTCACGGGATTAAACCGTTGGTCTTAGATCATCCGATGGTAGGGCAAGGTATGGG 996
Query 531 AGATAATCCAATGAA--CCTTGTCCTCGTCCCTTCTCCT-CAACTTGTAGAACTGTCCCT 587
||||||||| ||||| || | | | ||| ||||||| | | || || | || ||
Sbjct 997 AGATAATCCCATGAATGCCATATT-TATTCC-TTCTCCTACGCCC-GTGGAGGTTTCTCT 1053
Query 588 CGTAGAGGTCGTTGGTATCACCAAGTTTTATGATTT-CATTGAAGGTGGAAGTGGCT-TA 645
|| | |||||||| ||||| |||||| | | || ||| ||||| | |||||| | ||
Sbjct 1054 AATACAAGTCGTTGGAATCACAAAGTTTGAA-AGTTACATAGAAGGAGCAAGTGG-TGTA 1111
Query 646 AGCCTCTCTCAAA-ACTTG-ACCCGTAGGTTCTTAGATAGTAATTTGAAT-ATTCTCAAC 702
| | | ||||| | | ||| || ||||| || || ||| || ||||||| || ||||||
Sbjct 1112 ATC-T-TCTCATATAGTTGGACTCGTAGATTTTTCGATGGTGTTTTGAATTAT-CTCAAC 1168
Query 703 GAGA 706
||||
Sbjct 1169 GAGA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5