BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952161

Length=220
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G29160.1 | Symbols:  | pseudogene, similar to tropinone redu...   217    4e-56


> AT2G29160.1 | Symbols:  | pseudogene, similar to tropinone reductase 
I, blastp match of 60% identity and 2.5e-39 P-value 
to GP|18138053|emb|CAD20555.1||AJ427397 tropinone reductase 
I {Calystegia sepium} | chr2:12537251-12539334 REVERSE LENGTH=2084
Length=2084

 Score =  217 bits (117),  Expect = 4e-56
 Identities = 130/136 (96%), Gaps = 1/136 (1%)
 Strand=Plus/Plus

Query  80   AGGAGCTATGAATCAGCTAGCAAAAAACTTAGCATGCGAGTGGGCAAGTGATAACATAAG  139
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  247  AGGAGCTATGAATCAGCTAGCAAAAAACTTAGCATGCGAGTGGGCAAGGGATAACATAAG  306

Query  140  GGTTAACTCTGTCTGTCCATGGTTCATAGCAACTCCTTTAGCTAACAATGTAAGGCAATA  199
            |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  307  GGTTAATTCTGTCTGTCCATGGTTCATAGCAACTCCTTTAGCTAACATTGTAAGGCAATA  366

Query  200  AGATCAGAAAAAGAAA  215
            | || ||||||| |||
Sbjct  367  AAATGAGAAAAA-AAA  381


 Score =  110 bits (59),  Expect = 7e-24
 Identities = 69/74 (93%), Gaps = 0/74 (0%)
 Strand=Plus/Plus

Query  9    AGCATCGTACTCATGTCCTCCGCTGCAGGGGTTATGCATATCAATGTTGGTTCCATCTAT  68
            |||||||| |||||||||||  ||||||||||| | ||||||||||||||||||||||||
Sbjct  76   AGCATCGTGCTCATGTCCTCTACTGCAGGGGTTGTACATATCAATGTTGGTTCCATCTAT  135

Query  69   GGAGCAACTAAAGG  82
            ||||||||||||||
Sbjct  136  GGAGCAACTAAAGG  149



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9852478804


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5