BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952162
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 815 0.0
> AT2G29180.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 34 Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses -
0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:12543023-12543835
FORWARD LENGTH=701
Length=701
Score = 815 bits (441), Expect = 0.0
Identities = 505/535 (94%), Gaps = 8/535 (1%)
Strand=Plus/Plus
Query 3 GTGGGAGTGGACGGAAAGATGTCTGCAACAACAACACCATCTCTATCTCTTTCAAATTTC 62
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 41 GTGGGAGTGGACGGAAAGATGTCTGCGACAACAACACCATCTCTATCTCTTTCAAATTTC 100
Query 63 AGACCAAGATTCCAA-CATCCAGTTAAACCCCACCATATATCTCCACTCTCTTGGTCTGT 121
||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 101 AGACCAAGATTCCAAAC-TCCAGTTAAAGGCCACCATATATCTCCACTCTCTTGGTCTGT 159
Query 122 TTCAAGAAGAAAGATCTTGTCTTCAAGGGTTCTTCGTCTTCACCAGGAAAAAACCCAACT 181
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 160 TTCAAGAAGAAAGATCTTGTCTTTTAGGGTTCTTCGTCTTCACCAAGAAAAAACCCAACT 219
Query 182 ATGGAGAGTCTCTGCAACTCCGGAAGAAATTTCTCAAGAGATCGTTTCTTCTGATTC-T- 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 220 ATGGAGAGTCTCTGCAACTCCGGAAGAAATTTCCCAAGAGATCGTTTCTTCTGATTCATC 279
Query 240 T-CATCT---GAAGCAATTGTGTCAAGTGGTGGTCAAGATGGTGTTGCTCTGATTATACA 295
| | ||| | |||| ||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 280 TTCTTCTTCTGGAGCAGTTGTGTCTAGTGGTGGACAAGATGGTGTTGCTTTGATTATACA 339
Query 296 AGTGCTTCTCTTTGTTGCATTTCTTGCTCTCACTGTTCTCACCATTGGTGTTGTGTACAT 355
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 340 AGTGCTTCTCTTTGTTGCATTTCTTGCTCTCACGGTTCTCACCATTGGTGTTGTGTACAT 399
Query 356 TGGAGTGACTGAGTTCCTTGGGaagagggagagagagaagtttgagaaagatgaagcagc 415
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 400 TGGAGTGACTGAGTTTCTTGGGAAGAGGGAGAGAGAGAAGTTTGAGAAAGACGAGGCAGC 459
Query 416 gaagaagtctaagaaaggtgggaagaagaagGCAATGAGAGCCAAAGCTGGACCAAGAGG 475
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 460 AAAGAAGTCTAAGAAAGGTGGGAAGAAGAAGGCAATGAGAGCCAGAGCTGGACCAAGAGG 519
Query 476 TTTTGGTCAGAAGATTGAAGATGATGATATTGACATTGATCTTGAATGATTTTGT 530
||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 520 TTTTGGTCAGAAGATTGAAGATGATGACATCGACATTGATCTTGAGTGATTTTGT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5