BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952164
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein | ... 263 3e-69
AT3G44096.1 | Symbols: | transposable element gene | chr3:1585... 182 8e-45
AT3G44090.1 | Symbols: | F-box family protein | chr3:15839123-... 172 5e-42
> AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:15824938-15826391 REVERSE LENGTH=1284
Length=1284
Score = 263 bits (142), Expect = 3e-69
Identities = 333/421 (79%), Gaps = 30/421 (7%)
Strand=Plus/Plus
Query 105 GATGTCC-AAGAGAGATTT-AATGATTTTGTGGATAAAGCATTCGCTTTGAAAGGCAGTG 162
||| ||| || |||| ||| |||||||| ||||| | |||| ||||| |||| ||
Sbjct 157 GATATCCTAA-AGAG-TTTCAATGATTTCGTGGACAGTTCATTAGCTTTTCAAGGTGGT- 213
Query 163 AAA-ATATTAACAAGTTCTCACTTAAACTTAGTAGAACATATAAAGAAAAATT--ATATA 219
||| |||| || |||||||||||| | || || || || | || || | || ||||
Sbjct 214 AAACATATAAAAAAGTTCTCACTT---CATACTA-AA-AT-T-AA-AACATTTGAATATC 265
Query 220 AC--A-TTGACCGCTGGATATGTAATGCCCTGGAACAAGGTATCTCCGAGTTTCATCTAG 276
|| | ||||||||||||| ||||||||||||||||| ||| |||| || ||||||||
Sbjct 266 ACGTACTTGACCGCTGGATTTGTAATGCCCTGGAACACGGTGTCTCTGAACTTCATCTAC 325
Query 277 ACATAAAACCT--A-CATGG-TATGGTTGGCATGATCTCCCATCTGAAGTCTTCACCAGC 332
|| ||| | | | | ||| ||||| | | | |||||||| |||| |||| ||||
Sbjct 326 ACCTAATGCATGAATCGTGGCCGTGGTT-GTTTTCTATCCCATCTAAAGTTTTCAACAGC 384
Query 333 ACAACACTGGTTAAGCTGTCATTGGGAACAACACTACGTTG-CCAAGGACTTCCTTCGGA 391
|||||||||||||||||||||||||| | | |||| || |||| | ||||| ||||
Sbjct 385 TCAACACTGGTTAAGCTGTCATTGGGATCGAGACTATACTGCCCAA-GTTTTCCTCCGGA 443
Query 392 TACATCTCTCCCAGCACTAAAGATTCT-CTTCCTTGATTCAATCTTATTT-GAGGAGGAT 449
|||||||||||||||||||||| |||| | |||||||||||||||| ||| | ||| |||
Sbjct 444 TACATCTCTCCCAGCACTAAAGGTTCTGC-TCCTTGATTCAATCTTGTTTCG-GGATGAT 501
Query 450 CAATCATTTGATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACATTAC 509
|||| || | |||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 502 CAATTATCTAATGTGTTTCTCGCTGCATGCCCTGCACTTGAGGACTTAACCATACATCAC 561
Query 510 A 510
|
Sbjct 562 A 562
> AT3G44096.1 | Symbols: | transposable element gene | chr3:15859368-15863166
REVERSE LENGTH=3799
Length=3799
Score = 182 bits (98), Expect = 8e-45
Identities = 259/334 (78%), Gaps = 22/334 (7%)
Strand=Plus/Plus
Query 220 ACATTGACCGCTGGATATGTAATGCCCTGGAACA-AGGTATCTCCGAGTTTCATCTAGAC 278
||||||||| || ||||||||| ||| || ||| | || | || ||| |||| ||| |
Sbjct 173 ACATTGACCACTTGATATGTAAGGCCATGCTACACA-GTCTTTCTGAGCTTCACCTACAG 231
Query 279 ATAAAACCTACATGGTATGG-TTGGCATGATCTCCCATCTGAAGTCTTCACCAGCACAAC 337
|||| | |||||| | ||| || | | | ||||||| |||| ||||||||||||||
Sbjct 232 ATAATATCTACATCG--TGGCTT---A-G-TTTCCCATCCCAAGTATTCACCAGCACAAC 284
Query 338 ACTGGTTAAGCTGTCATT-GGGAACAACACTACGTTGCCAAGGA-CTTCCTTCGGATACA 395
|||||||||||||||||| ||||| ||| | || | | || || || | ||||||
Sbjct 285 ACTGGTTAAGCTGTCATTGGGGAA-AACCCAAC-ACATCTATGAGTTTTCTCCTGATACA 342
Query 396 TCTCTCCCAGCACTAAAGATTCTCTTCCTTGATTCAATCT--TATTTGAGGAGGATCAAT 453
|||||||||| ||||||| ||||| |||||||||| |||| | |||| | | ||| ||
Sbjct 343 TCTCTCCCAGTACTAAAGGTTCTCCTCCTTGATTCTATCTGGT-TTTG-GAAATATCCAT 400
Query 454 CATTTGATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACATTACAA-A 512
| |||| ||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 401 TAGCAAATGTATTTTTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTACAATA 460
Query 513 GTATATCA-AGGAAATTCATACGTCGTATCCAGC 545
| | | | ||||| ||||||||| ||||||||
Sbjct 461 ATTT-T-AGAGGAAGTTCATACGTTATATCCAGC 492
> AT3G44090.1 | Symbols: | F-box family protein | chr3:15839123-15840759
FORWARD LENGTH=1350
Length=1350
Score = 172 bits (93), Expect = 5e-42
Identities = 177/214 (83%), Gaps = 19/214 (9%)
Strand=Plus/Plus
Query 306 GATCTCCCAT-CTGAAGTCTTCACCAGCA-CAACACTGGTTAAGCTGTCATTGGGAACAA 363
||| |||||| | ||||||||||||||| ||| |||||||||||||||||||||||| |
Sbjct 434 GAT-TCCCATAC-AAAGTCTTCACCAGCACCAA-ACTGGTTAAGCTGTCATTGGGAAC-A 489
Query 364 C-ACTACG-TTG-CCAAGGACTTCCTTC-GGATACATCTCTCCCAG-CACT-AAAGATTC 417
| |||| | || |||| || |||| || |||||||||||||| | | || |||| | |
Sbjct 490 CGACTA-GCCTGCCCAA-GAATTCC-TCAAGATACATCTCTCCCGGTC-CTAAAAG-TCC 544
Query 418 TCTTCCTTGATTCA-ATCTTATTTGAGGAGGATCAATCATTTGATGTGTTTCTCGCTGCT 476
|| | ||||| | | || | |||||||| |||||| || ||||||||||||||| |||
Sbjct 545 TCCTACTTGAAT-ATATATGGTTTGAGGATAATCAATTATCTGATGTGTTTCTCGCAGCT 603
Query 477 TGCCCTGCACTTGAGGACTTAACCATACATTACA 510
|||||||||||||||||||||||||||||| |||
Sbjct 604 TGCCCTGCACTTGAGGACTTAACCATACATCACA 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50987659205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5