BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952166
Length=340
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50420.1 | Symbols: | O-fucosyltransferase family protein |... 337 5e-92
> AT5G50420.1 | Symbols: | O-fucosyltransferase family protein
| chr5:20530206-20532856 REVERSE LENGTH=2169
Length=2169
Score = 337 bits (182), Expect = 5e-92
Identities = 210/224 (94%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 67 GTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAGGAATCTGAGCTTTGTGCTTTTTATC 126
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 508 GTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAAGAATCTGAGCTTCGTGCTTTGTATC 567
Query 127 TTCTGAGACAACAACATCTTTCGCTTCTCTCTCTTTGGAATGGTACGTTGGTGAATCCTT 186
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 568 TTCTGAGACAACAACAGCTCGCGCTTCTATCTCTTTGGAATGGTACGTTGGTGAATCCTT 627
Query 187 CTCTTAATCAATCGGAGAATGCTTTGGGATCATTTGTGTTGTTTGAAGATGTGAAATCTG 246
||||||||||||| ||||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct 628 CTCTTAATCAATCTGAGAACGCTTTGGGATCGTCTGTTTTGTTTGAGGATGTGAAATCTG 687
Query 247 CTGTTTCGAAGCAGATTTCATTGAATAAAGAGATCCAAGAGGTG 290
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 688 CTGTTTCGAAGCAGATTTCATTGAATAAGGAGATCCAAGAGGTG 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15884608684
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5