BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952169 Length=364 Score E Sequences producing significant alignments: (Bits) Value AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS... 531 2e-150 > AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS | chr2:16134638-16136695 FORWARD LENGTH=1677 Length=1677 Score = 531 bits (287), Expect = 2e-150 Identities = 321/338 (95%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 21 ATGTTCAACCTGAGGGACGGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACCGGGGAG 80 ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 978 ATGTTCAACCTGAGGGATAGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACTGGGGAG 1037 Query 81 ATTTCACCGGAGAAACTCATCACATTGTCTGCTGAAGAAATGGCAAGCGACAAGAGGAAA 140 |||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||||||| Sbjct 1038 ATTTCACCAGAGAAACTCATAACATTGTCTGCCGAAGATATGGCAAGTGACAAGAGGAAA 1097 Query 141 CAAGAGAACAATCATATCAAAGAGAAAGCCCTGTTTGATTGCGAGCGTGGTCTTGCAGCA 200 ||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1098 CAAGAGAACAACCAGATCAAAGAGAAAGCCCTGTTTGATTGTGAGCGTGGTCTTGCTGCA 1157 Query 201 AAAGCATCTACCGAACAGTTCAAGTGCGGGCGGTGTGGTCAACGCAAATGCACCTACTAT 260 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1158 AAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAGCGCAAATGCACCTACTAT 1217 Query 261 CAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACCTATGTTACATGTGTTAACTGT 320 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1218 CAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACTTATGTTACATGTGTTAACTGT 1277 Query 321 GACAACCACTGGAAGTTCTGTTAAGGAGATCTTTGTGT 358 |||||||||||||||||||||| ||||||||| ||||| Sbjct 1278 GACAACCACTGGAAGTTCTGTTGAGGAGATCTCTGTGT 1315 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17091034660 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5