BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952169

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS...   531    2e-150


> AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS 
| chr2:16134638-16136695 FORWARD LENGTH=1677
Length=1677

 Score =  531 bits (287),  Expect = 2e-150
 Identities = 321/338 (95%), Gaps = 0/338 (0%)
 Strand=Plus/Plus

Query  21    ATGTTCAACCTGAGGGACGGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACCGGGGAG  80
             |||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||
Sbjct  978   ATGTTCAACCTGAGGGATAGTAACAACCCGGACTTAAGAAGGAGGGTTCTCACTGGGGAG  1037

Query  81    ATTTCACCGGAGAAACTCATCACATTGTCTGCTGAAGAAATGGCAAGCGACAAGAGGAAA  140
             |||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct  1038  ATTTCACCAGAGAAACTCATAACATTGTCTGCCGAAGATATGGCAAGTGACAAGAGGAAA  1097

Query  141   CAAGAGAACAATCATATCAAAGAGAAAGCCCTGTTTGATTGCGAGCGTGGTCTTGCAGCA  200
             ||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  1098  CAAGAGAACAACCAGATCAAAGAGAAAGCCCTGTTTGATTGTGAGCGTGGTCTTGCTGCA  1157

Query  201   AAAGCATCTACCGAACAGTTCAAGTGCGGGCGGTGTGGTCAACGCAAATGCACCTACTAT  260
             |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1158  AAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAGCGCAAATGCACCTACTAT  1217

Query  261   CAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACCTATGTTACATGTGTTAACTGT  320
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1218  CAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACTTATGTTACATGTGTTAACTGT  1277

Query  321   GACAACCACTGGAAGTTCTGTTAAGGAGATCTTTGTGT  358
             |||||||||||||||||||||| ||||||||| |||||
Sbjct  1278  GACAACCACTGGAAGTTCTGTTGAGGAGATCTCTGTGT  1315



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17091034660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5