BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952170
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08990.1 | Symbols: | DNA (cytosine-5-)-methyltransferase f... 571 2e-162
AT4G14140.2 | Symbols: DMT2 | DNA methyltransferase 2 | chr4:81... 531 3e-150
AT5G49160.1 | Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 | me... 455 2e-127
AT4G13610.1 | Symbols: MEE57 | DNA (cytosine-5-)-methyltransfer... 425 2e-118
> AT4G08990.1 | Symbols: | DNA (cytosine-5-)-methyltransferase
family protein | chr4:5764781-5770496 FORWARD LENGTH=4539
Length=4539
Score = 571 bits (309), Expect = 2e-162
Identities = 375/407 (92%), Gaps = 4/407 (1%)
Strand=Plus/Plus
Query 100 TTTAAACAAAACCATCCTGACGCGACGGTTTTTGTTGACAACTGCAATGTGATTCTTAGG 159
||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 3325 TTTAAACAAAACCATCCCGAAGCAACGGTTTTTGTTGACAACTGCAATGTCATTCTTAGG 3384
Query 160 GCTATAATGGAGAAATGTGGAGATGTGGATGATTGTATCTCTACTGTGGAGGCAGCTGAA 219
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 3385 GCTATAATGGAGAAATGTGGAGATGTCGATGATTGTGTCTCTACTGTGGAGGCAGCTGAA 3444
Query 220 CTTGCAGCTAAACTTGATGATAACCAGAAGAGTACTCTGCCACTGCCTGGTCAAGTGGAT 279
|||| ||||||||||||||| ||||| |||||||| |||||||| |||||||||| ||||
Sbjct 3445 CTTGTAGCTAAACTTGATGAGAACCAAAAGAGTACCCTGCCACTTCCTGGTCAAGCGGAT 3504
Query 280 TTCATCAACGGAGGGCCTCCATGCCAAGGGTTTTCTGGTATGAACAGGTTCAGTGACCGC 339
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3505 TTCATCAGCGGAGGGCCTCCATGCCAAGGGTTTTCTGGTATGAACAGGTTCAGTGACGGT 3564
Query 340 TCTTGGAGTAAAGTCCAATGTGAAATGATATTAGCATTCTTGTCTTTTGCTGATTATTTC 399
|| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 3565 TCGTGGAGTAAAGTACAGTGTGAAATGATATTAGCATTCTTGTCCTTTGCTGATTATTTC 3624
Query 400 CGGCCAAAGTATTTTCTTCTCGAGAACGTGAAGAAAATTGT-ATCTTTCAATAACGGGCA 458
|| |||||||||||||||||||||||||| |||||| |||| | | | |||||| ||| |
Sbjct 3625 CGACCAAAGTATTTTCTTCTCGAGAACGTAAAGAAATTTGTGA-CATACAATAAAGGG-A 3682
Query 459 -AACATTTCAACTTACTATCGCTTCTCTTCTTGAAATGGGATACCAA 504
|||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 3683 GAACATTTCAACTTACTATGGCTTCTCTTCTTGAAATAGGTTACCAA 3729
Score = 132 bits (71), Expect = 4e-30
Identities = 82/87 (94%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 4 GATGAGGCACCTAAAGAGATGCGTCTAGCTACACTAGATATTTTTGCTGGATGTGGTGGC 63
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3187 GATGAGGTACCTAAAGAGATGCGTCTAGCTACACTAGATATTTTTGCTGGATGTGGTGGT 3246
Query 64 CTCTCTTATGGACTAGAAAAGGC-GGT 89
|| ||| |||||||||||||||| |||
Sbjct 3247 CTATCTCATGGACTAGAAAAGGCTGGT 3273
> AT4G14140.2 | Symbols: DMT2 | DNA methyltransferase 2 | chr4:8146345-8152131
FORWARD LENGTH=4638
Length=4638
Score = 531 bits (287), Expect = 3e-150
Identities = 369/406 (91%), Gaps = 15/406 (4%)
Strand=Plus/Plus
Query 100 TTTAAACAAAACCATCCTGACGCGACGGTTTTTGTTGACAACTGCAATGTGATTCTTAGG 159
|||||||||||||||||||| || ||||||||||||||||||||||||| | | |
Sbjct 3435 TTTAAACAAAACCATCCTGAAGCAACGGTTTTTGTTGACAACTGCAATG-G---C--A-- 3486
Query 160 GCTATAATGGAGAAATGTGGAGATGTGGATGATTGTATCTCTACTGTGGAGGCAGCTGAA 219
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 3487 ---ATAATGGAGAAATGTGGAGATGTCGATGATTGTGTCTCTACTGTGGAGGCAGCTGAA 3543
Query 220 CTTGCAGCTAAACTTGATGATAACCAGAAGAGTACTCTGCCACTGCCTGGTCAAGTGGAT 279
|||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct 3544 CTTGCAGCTAAACTTGATGAGAACCAAAAGAGTACCCTGCCACTTCCTGGTCAAGTAGAT 3603
Query 280 TTCATCAACGGAGGGCCTCCATGCCAAGGGTTTTCTGGTATGAACAGGTTCAGTGACCGC 339
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||
Sbjct 3604 TTCATCAACGGAGGGCCTCCATGCCAGGGGTTTTCTGGTATGAATAGGTTCAGTCACGGC 3663
Query 340 TCTTGGAGTAAAGTCCAATGTGAAATGATATTAGCATTCTTGTCTTTTGCTGATTATTTC 399
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3664 TCTTGGAGTAAAGTCCAGTGTGAAATGATATTAGCATTCTTGTCTTTTGCTGATTATTTC 3723
Query 400 CGGCCAAAGTATTTTCTTCTCGAGAACGTGAAGAAAATTGT-ATCTTTCAATAACGGGCA 458
||||||||||| |||||||||||||||||||||||| |||| | | | |||||| ||| |
Sbjct 3724 CGGCCAAAGTACTTTCTTCTCGAGAACGTGAAGAAATTTGTGA-CATACAATAAAGGG-A 3781
Query 459 -AACATTTCAACTTACTATCGCTTCTCTTCTTGAAATGGGATACCA 503
|||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 3782 GAACATTTCAACTTACTATGGCTTCTCTTCTTGAGATGGGTTACCA 3827
Score = 115 bits (62), Expect = 4e-25
Identities = 79/87 (91%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 4 GATGAGGCACCTAAAGAGATGCGTCTAGCTACACTAGATATTTTTGCTGGATGTGGTGGC 63
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 3208 GATGAGGTACCTAAAGAGAAGCCTCTAGCTACACTAGATATTTTTGCTGGATGTGGTGGT 3267
Query 64 CTCTCTTATGGACTAGAAAAGGC-GGT 89
|| ||| ||||||||||||| || |||
Sbjct 3268 CTATCTCATGGACTAGAAAATGCTGGT 3294
> AT5G49160.1 | Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 |
methyltransferase 1 | chr5:19932230-19938369 FORWARD LENGTH=4845
Length=4845
Score = 455 bits (246), Expect = 2e-127
Identities = 360/415 (87%), Gaps = 8/415 (2%)
Strand=Plus/Plus
Query 93 GCAAGCTTTTAAACAAAACCATCCTGACG-CGACGGTTTTTGTTGACAACTGCAATGTGA 151
||| ||||||||||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct 3441 GCAGGCTTTTAAACAAAACCATCCTGA-GTCAACAGTTTTTGTTGACAACTGCAATGTGA 3499
Query 152 TTCTTAGGGCTATAATGGAGAAATGTGGAGATGTGGATGATTGTATCTCTACTGTGGAGG 211
||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||
Sbjct 3500 TTCTTAGGGCTATAATGGAGAAAGGTGGAGATCAAGATGATTGTGTCTCTACTACAGAGG 3559
Query 212 CAGCTGAACTT-GCAGCTAAACTTGA-TGATAACCAGAAGAGTACTCTGCCACTGCCTGG 269
|| |||| || ||||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct 3560 CAAATGAA-TTAGCAGCTAAACTA-ACTGAGGAGCAGAAGAGTACTCTGCCACTGCCTGG 3617
Query 270 TCAAGTGGATTTCATCAACGGAGGGCCTCCATGCCAAGGG-TTTTCTGGTATGAACAGGT 328
||||||||| |||||||| || || |||||||| || ||| |||||||||||||||||||
Sbjct 3618 TCAAGTGGACTTCATCAATGGTGGACCTCCATGTCA-GGGATTTTCTGGTATGAACAGGT 3676
Query 329 TCAGTGACCGCTCTTGGAGTAAAGTCCAATGTGAAATGATATTAGCATTCTTGTCTTTTG 388
||| | |||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 3677 TCAACCAAAGCTCTTGGAGTAAAGTTCAGTGTGAAATGATATTAGCATTCTTGTCCTTTG 3736
Query 389 CTGATTATTTCCGGCCAAAGTATTTTCTTCTCGAGAACGTGAAGAAAATTGTATCTTTCA 448
|||| ||||||||||||| |||||||||||| |||||||||| || |||| || ||||
Sbjct 3737 CTGACTATTTCCGGCCAAGGTATTTTCTTCTGGAGAACGTGAGGACCTTTGTGTCATTCA 3796
Query 449 ATAACGGGCAAACATTTCAACTTACTATCGCTTCTCTTCTTGAAATGGGATACCA 503
|||| ||||| |||||||| |||||| | ||||| ||||| |||||||| |||||
Sbjct 3797 ATAAAGGGCAGACATTTCAGCTTACTTTGGCTTCCCTTCTCGAAATGGGTTACCA 3851
> AT4G13610.1 | Symbols: MEE57 | DNA (cytosine-5-)-methyltransferase
family protein | chr4:7915022-7921231 FORWARD LENGTH=4215
Length=4215
Score = 425 bits (230), Expect = 2e-118
Identities = 310/349 (89%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 157 AGGGCTATAATGGAGAAATGTGGAGATGTGGATGATTGTATCTCTACTGTGGAGGCAGCT 216
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 3109 AGGGCTATAATGGAGAAATGTGGAGATGTTGATGATTGTATCTCTACTACGGAGGCAGCT 3168
Query 217 GAACTTGCAGCTAAACTTGATGATAACCAGAAGAGTACTCTGCCACTGCCTGGTCAAGTG 276
||||||||| | ||||||||||| |||||||||||||| || ||||| || |||||||||
Sbjct 3169 GAACTTGCAACGAAACTTGATGAGAACCAGAAGAGTACCCTACCACTTCCCGGTCAAGTG 3228
Query 277 GATTTCATCAACGGAGGGCCTCCATGCCAAGGGTTTTCTGGTATGAACAGGTTCAGTGAC 336
|||||||||| ||||||||||| ||||| ||||||||| || | || ||||||||||||
Sbjct 3229 GATTTCATCAGTGGAGGGCCTCCGTGCCAGGGGTTTTCTCGTTTAAATAGGTTCAGTGAC 3288
Query 337 CGCTCTTGGAGTAAAGTCCAATGTGAAATGATATTAGCATTCTTGTCTTTTGCTGATTAT 396
|||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 3289 GGCTCTTGGAGTAAAAACCAGTGTCAAATGATATTAGCATTCTTGTCTTTTGCTGACTAT 3348
Query 397 TTCCGGCCAAAGTATTTTCTTCTCGAGAACGTGAAGAAAATT-GTATCTTTCAAT-AACG 454
||||||||||||||||||||||| ||||||||||| || || || || |||||| || |
Sbjct 3349 TTCCGGCCAAAGTATTTTCTTCTAGAGAACGTGAA-AACCTTTGTGTCATTCAATGAA-G 3406
Query 455 GGCAAACATTTCAACTTACTATCGCTTCTCTTCTTGAAATGGGATACCA 503
| || |||||||| |||||| | |||||||||||||||||||| |||||
Sbjct 3407 GACATACATTTCATCTTACTGTAGCTTCTCTTCTTGAAATGGGTTACCA 3455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25569180823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5