BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952171
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter 4... 931 0.0
AT3G03500.1 | Symbols: | TatD related DNase | chr3:832929-8343... 272 5e-72
AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein ... 270 2e-71
AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits... 209 4e-53
AT3G03790.3 | Symbols: | ankyrin repeat family protein / regul... 145 1e-33
> AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter
4 | chr3:925612-930974 REVERSE LENGTH=2664
Length=2664
Score = 931 bits (504), Expect = 0.0
Identities = 562/590 (95%), Gaps = 4/590 (1%)
Strand=Plus/Plus
Query 519 GTGATACCGATGAAAGTGGAGCTGAAACTGAAAATTTTCTTGTGGATGCTATAGAATCTT 578
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 GTGATACCGATGAAAGTAGAGCTGAAACTGAAAATTTTCTTGTGGATGCTATAGAATCTT 1924
Query 579 CTGATTCCCCTCTACTTGGCAATGAAACTGCACGAGATGAAAAGTATTTTGGAAAGAGAA 638
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1925 CTGATTCCCCTCTACTTGGAAATGAAACTGCTCGAGATGAAAAGTATTTTGGAAAGAGGA 1984
Query 639 GAAAAATTGCGT-CATGGAGTATAGCTCTTGTGTGCATAGGTGTGCTAGGTCTTGCTTCA 697
|||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1985 GAAAAATTGC-TGCCTGGAGTATAGCTCTTGTGTGCATAGGTGTCCTAGGTCTTGCTTCA 2043
Query 698 GCAGCTTCGGCTGAGCGTCTTCCAAGTTTTCCTCGGTTCACTATATGTGGTGTCAGTGCC 757
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2044 GCAGCTTCAGCTGAGCGTCTTCCAAGTTTTCCTCGTTTCACTATATGTGGTGTCAGTGCA 2103
Query 758 GTCATCTTGCTTGGCAGTTTGATTACTCTTGGCTACATCGACGAGGATGAAGAAAGGCAC 817
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2104 GTCATCTTGCTTGGCAGTTTGATTACTCTTGGCTACATTGACGAGGATGAAGAAAGGCAC 2163
Query 818 AACTTTGGACACAAAGGAGGGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGC 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2164 AACTTTGGACACAAAGGAGGGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGC 2223
Query 878 ATATTGATCAACACCTACTTGATCATCAACATTGG--CTGGGACATGGATCAGGGTCTTG 935
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2224 ATTTTGATCAACACCTACTTGATCATCAACATTGGAGCTGGGACATGGATCAGGGTCTTG 2283
Query 936 GTATGGCTACTTATTGGAAGCATGATCTATCTCTTCTATGGCCGATCTCACAGCTTACTG 995
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2284 ATATGGCTACTTATTGGAAGCATGATCTATATCTTCTATGGCCGATCTCACAGCTTACTG 2343
Query 996 AACAATGCGGTTTGCGTTCCAAGGACGACTTGTACCAGAAAAACAACAGATCATCTTGCT 1055
||||||||||||| |||||| | | ||||||||| ||||||||||||||||||||||||
Sbjct 2344 AACAATGCGGTTTACGTTCCCACAATGACTTGTACGAGAAAAACAACAGATCATCTTGCT 2403
Query 1056 TAAGATTGGTGGTTCAATGCAGCAGCTGAAGGGAGTCGAGCTCAAGCTTT 1105
|||||||||||| ||||||| |||| | |||||| |||||||||||||||
Sbjct 2404 TAAGATTGGTGGATCAATGCTGCAGTTAAAGGGACTCGAGCTCAAGCTTT 2453
> AT3G03500.1 | Symbols: | TatD related DNase | chr3:832929-834350
FORWARD LENGTH=819
Length=819
Score = 272 bits (147), Expect = 5e-72
Identities = 183/199 (92%), Gaps = 7/199 (4%)
Strand=Plus/Plus
Query 326 ATGAAGTTGTTTGATGCTCATTGTCACCTCCAAGACAAGAGGGTCTTCGACAAAGCCTCT 385
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGAAGTTGTTTGATGCTCATTGTCACCTCCAAGACAAGAGGGTCATCGACAAAGCCTCG 60
Query 386 CAGCTCATATCTGCTCTG-TTTAGCTGTCGGTGTTACCAACTTCGCAGTCAATGGAACCT 444
||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 CAGCTCATATCTG--CTGCTTTAGCTGTCGGTGTTACCAATTTCGCAGTCAATGGAACCT 118
Query 445 CC--G--AGATTGGGACTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTGTACCTT 500
|| | ||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 CCGAGAAAGATTGGAACTTGGTGAAAGAGATGGGAGAGACGTATCCTTCTGTTGTTCCTT 178
Query 501 GCATCGGAGTACATCCTTG 519
|| | ||| | ||||||||
Sbjct 179 GCTTTGGACTCCATCCTTG 197
> AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein
Fb12, blastp match of 53% identity and 1.2e-13 P-value to
GP|25992543|gb|AAN77151.1||AF531371 fiber protein Fb12 {Gossypium
barbadense} | chr2:16277009-16279354 REVERSE LENGTH=2346
Length=2346
Score = 270 bits (146), Expect = 2e-71
Identities = 179/195 (92%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 912 GCTGGGACATGGATCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCTTC 971
|||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||
Sbjct 2008 GCTGGGACATGGATCAGGGTCTTGGTATCGCTACTTATCGGAAGCATGATCTGTCTCTTC 2067
Query 972 TATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTGCGTTCCAAGGACGACTTGTACC 1031
| ||||||||||||| | || |||||||||| ||||| |||||||| ||||||||||||
Sbjct 2068 TGTGGCCGATCTCACTGTTTGCTGAACAATGTGGTTTACGTTCCAACAACGACTTGTACC 2127
Query 1032 AGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTCAATGCAGC-AGCTGAAGGGAG 1090
|||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 2128 AGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTTAATGCAGCTA-CTGAAGGGAC 2186
Query 1091 TCGAGCTCAAGCTTT 1105
||||| |||||||||
Sbjct 2187 TCGAGTTCAAGCTTT 2201
Score = 134 bits (72), Expect = 2e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 835 AGGGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATATTGATCAACACCTA 894
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1849 AGGGTTTCTCTGCTCATTCGTCCCATACCTTCCAGTTCTTTGCATTTTGATCAACACCTA 1908
Query 895 CTTGATCATCAACATTGG 912
||||||||||||||||||
Sbjct 1909 CTTGATCATCAACATTGG 1926
> AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:1100085-1100246
REVERSE LENGTH=162
Length=162
Score = 209 bits (113), Expect = 4e-53
Identities = 135/145 (93%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 916 GGA-CATGGA-TCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCTTCTA 973
||| || ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 19 GGATCAGGGATTCAGGGTCTTGGTATGGCTATTTACTGGAAGCATGATCTATCTCTTCTA 78
Query 974 TGGCCGATCTCACAGCTTACTGAACAATGCGGTTTGCGTTCCAAGGACGACTTGTACCAG 1033
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||
Sbjct 79 TGGCCGATCTCACAGCTTACTGAACAATGTGGTTTACGTTCCAACGACGACTTGAACCAG 138
Query 1034 AAAAACAACAGATCATCTTGCTTAA 1058
|||| ||||||||||||||||||||
Sbjct 139 AAAA-CAACAGATCATCTTGCTTAA 162
> AT3G03790.3 | Symbols: | ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein | chr3:961997-968149
FORWARD LENGTH=3932
Length=3932
Score = 145 bits (78), Expect = 1e-33
Identities = 88/93 (95%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 116 TCTGATGTGGGAAAACGAACTCCTCCTTGGGCTTCCTCTGAAACTCCTCGTAACCTGTCT 175
|||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 3423 TCTGATGTGGAAAAAGGAACTCCTCCTTGGGCTTCCTCTGAAACTCCGCGTAAACTGTCT 3482
Query 176 CGACCTTCTCTTAGAGATATCCAGATGCAGGAG 208
||||||||||| |||||||||||||||||||||
Sbjct 3483 CGACCTTCTCTCAGAGATATCCAGATGCAGGAG 3515
Score = 134 bits (72), Expect = 2e-30
Identities = 82/87 (94%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 206 GAGATAGATGCTCCATCAGCAATACGATCAATCCAGATAGAAGAAAAAGCCATGAAGGAT 265
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3633 GAGATAGATGCTCCATCAGCAATCCGATCAATCCAGATAGAAGAAAAAGCCATGAAGGAT 3692
Query 266 CTGTGCCGCATCTACAGCAGCGTGAAG 292
|| ||||| ||||||| |||||||||
Sbjct 3693 CTCCGCCGCTTCTACAGTAGCGTGAAG 3719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5