BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952174

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18350.1 | Symbols:  | Plant protein of unknown function (DU...   172    1e-42
  AT3G18362.1 | Symbols:  | other RNA | chr3:6302112-6303924 FORW...   152    1e-36


> AT3G18350.1 | Symbols:  | Plant protein of unknown function (DUF639) 
| chr3:6296850-6300673 FORWARD LENGTH=2575
Length=2575

 Score =  172 bits (93),  Expect = 1e-42
 Identities = 93/93 (100%), Gaps = 0/93 (0%)
 Strand=Plus/Plus

Query  1    AGGTCATCTAGCCGATAAAAAGTTTCGGCGCTTAACATTTGACATGATGGTTGTCTGGGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  650  AGGTCATCTAGCCGATAAAAAGTTTCGGCGCTTAACATTTGACATGATGGTTGTCTGGGA  709

Query  61   AGTCCCAGCTGTTGCTAGCCAGGCTTTACTCAG  93
            |||||||||||||||||||||||||||||||||
Sbjct  710  AGTCCCAGCTGTTGCTAGCCAGGCTTTACTCAG  742


> AT3G18362.1 | Symbols:  | other RNA | chr3:6302112-6303924 FORWARD 
LENGTH=933
Length=933

 Score =  152 bits (82),  Expect = 1e-36
 Identities = 109/122 (89%), Gaps = 2/122 (2%)
 Strand=Plus/Plus

Query  95   TTTGCTCTCGAGGAAACTGGTGAAAATGGGGAAGGAAAATGCATAGCAGAGAAACAAACT  154
            |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct  559  TTTGCTCTTGAGGAAACTGGTGACAATTGGGAAGGAAAATGCATAGCAGAGAAACAAACT  618

Query  155  GATCGTCTTGACCTCGAATTATCAAAAGCGGAAGCTAAACAGAGTAATGA-AAGA-GAAA  212
            || |||||||| ||| |||||||||| ||||||||||| |||| | |||| || | ||||
Sbjct  619  GAGCGTCTTGAACTCAAATTATCAAATGCGGAAGCTAATCAGATTGATGAGAAAAAGAAA  678

Query  213  AA  214
            ||
Sbjct  679  AA  680



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5