BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952175
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18980.1 | Symbols: ETP1 | EIN2 targeting protein1 | chr3:65... 390 1e-107
AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:65... 172 5e-42
AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 134 2e-30
AT3G18330.1 | Symbols: | F-box family protein | chr3:6291127-6... 126 4e-28
AT2G07130.1 | Symbols: | pseudogene, hypothetical protein | ch... 108 1e-22
AT3G49980.1 | Symbols: | F-box and associated interaction doma... 62.1 1e-08
AT3G20690.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07
> AT3G18980.1 | Symbols: ETP1 | EIN2 targeting protein1 | chr3:6546463-6548062
FORWARD LENGTH=1600
Length=1600
Score = 390 bits (211), Expect = 1e-107
Identities = 494/620 (80%), Gaps = 62/620 (10%)
Strand=Plus/Plus
Query 280 TATGCACCCACGAAGGC-AG---CCTCCGGTACGGATC-ACAAATCGTTGTTTGGAACCC 334
|||||| ||||| |||| || || ||| |||||||| | ||||||| |||||||||||
Sbjct 380 TATGCAACCACGTAGGCAAGAATCC-CCGATACGGATCTA-AAATCGTGGTTTGGAACCC 437
Query 335 GTTTACTGGTCAGACCAGGTGGATCGAATCCGGCAATCGTTGCAAGGAAGGC-AA--AAT 391
| | |||||||| ||||||||||||||| ||||| ||||||| |||||| | || |
Sbjct 438 GCTGACTGGTCAAACCAGGTGGATCGAAGCCGGCTATCGTTGGAAGGAATACGAAGTCAG 497
Query 392 ATTTGTTCTAGGATACTACTA-C--CAAGACAAGAACAAGTCCTGCAGT---AAAAGCTA 445
||||||||| ||||||| ||| | |||||| ||||||| ||||||||| |||| |||
Sbjct 498 ATTTGTTCTCGGATACTGCTACCAGCAAGACGAGAACAATTCCTGCAGTAAAAAAATCTA 557
Query 446 CAAAGTTTTGTG-CTTGAGTCCTTTTGG-CAATGATACAGAAATCTACGAG-TTAA--AC 500
|||| ||||||| || | |||| ||| ||| |||||||||||||||||| |||| ||
Sbjct 558 CAAAATTTTGTGTTTTTA-TCCTAATGGCCAA-GATACAGAAATCTACGAGCTTAACTAC 615
Query 501 TCTGATTCGTGG---AGGAGGATTCCTGAT-G-G-TC-CAGGCTA--CT--ACATT--TC 547
|||||| |||| |||| |||||||||| | | || || | | || || || |
Sbjct 616 TCTGATAGGTGGACAAGGACGATTCCTGATGGTGATCTCACTCCAGGCTGGACCTTGAT- 674
Query 548 AGACTCTG-GCCATATGGTGTCTTTGAAGGGAAATAC-TTACTGGTTTGC-TCGTGAGAT 604
| |||| | | || | |||||| |||| |||||| | ||||| |||||| ||| ||||
Sbjct 675 ATACTCAGAG-CAGACCGTGTCTATGAATGGAAAT-CTTTACTTGTTTGCTTCG-GAGAA 731
Query 605 AGCAAAACCGCATCTCGGCATATCCTTGCTCGGATTTGATTT-TCAGACAGAGAAATCAT 663
| ||||||| ||||| ||| | ||||||||| |||||||||| ||| |||||||||||||
Sbjct 732 ATCAAAACCCCATCTTGGCGTGTCCTTGCTCAGATTTGATTTCTCA-ACAGAGAAATCAT 790
Query 664 CATCTTTTTGTTTGCCTCTTCCCTATCAGGGTCCACTCTATGAAATTTTGAGTCTTTCCG 723
| || | ||| || |||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 791 C-TC--TATGTGTGACTCTTCCCTATCAGCGTCCAAGGTATGAAATTTTGAGTATTTCCG 847
Query 724 TCGTTAGA-GA--AGAGAAACTTTC-CGTGTT-TATACAACCCG-TTTAT-ACATCCAAG 776
||||||| || |||||| ||||| | |||| | | || | || ||| | | ||| |||
Sbjct 848 CCGTTAGAGGAGGAGAGAATCTTTCTC-TGTTGT-TGCAGCTCGATTT-TGA-ATCTAAG 903
Query 777 ACTGAGATATGGGTGACGAGTAAGATTGATGACACCACCACCAAAGGAGCAGT--T-TCT 833
||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 904 ACTGAGATATGGGTGACGAATAAGATTGATGACACCACCACCAAAGGAGCAGCAGTCTCT 963
Query 834 TGGACCAAGGTCTTATCATT 853
|||||||||||| || ||||
Sbjct 964 TGGACCAAGGTCCTAGCATT 983
Score = 102 bits (55), Expect = 7e-21
Identities = 155/198 (78%), Gaps = 27/198 (14%)
Strand=Plus/Plus
Query 980 CGACAAGATATACATTCTCGGGGAGGATAATAAAGTC-ATTGAAGTGAGTTT-TGGTGTG 1037
||||||||||||||||||||||||||||||||||||| || ||||| || || ||| | |
Sbjct 1128 CGACAAGATATACATTCTCGGGGAGGATAATAAAGTCGAT-GAAGT-AGGTTCTGGAGAG 1185
Query 1038 GGT-A---TA-A----C--T-GAAGGA-TGTTGGCCAGCTATTCTTAATTATGTTCCAAG 1084
|| | || | | | |||||| | || || || |||||| ||||| | ||||||
Sbjct 1186 GGAGAGGCTACAGATTCACTTGAAGGAAT-TTCGCAAGTTATTCTCAATTACGCTCCAAG 1244
Query 1085 TTTGGCTCGAGTT-GAGCCAGCTGG-GG-G-CAAAAGAAAAAGAGGTGAC---TAAA-CA 1136
||||| || | | |||| ||| || || | ||||| ||||||||||||| |||| ||
Sbjct 1245 TTTGG-TCCAAATCGAGCAAGCCGGAGGAGGCAAAACAAAAAGAGGTGACGACTAAAACA 1303
Query 1137 ACCTCTACATGTAATATT 1154
||||||||||||||||||
Sbjct 1304 ACCTCTACATGTAATATT 1321
> AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:6521719-6523043
FORWARD LENGTH=1325
Length=1325
Score = 172 bits (93), Expect = 5e-42
Identities = 626/870 (72%), Gaps = 89/870 (10%)
Strand=Plus/Plus
Query 319 TCGTTGTTTGGAACCCGTTT-ACTGGTCAGACCAGGTGGATC-GAATCCGGCAATCGTT- 375
|||| |||||||| || ||| || ||| | |||||||||||| ||| ||||| || ||
Sbjct 409 TCGTGGTTTGGAATCC-TTTAACCGGTGAAACCAGGTGGATCAGAA-CCGGCGAT-TTTC 465
Query 376 G-CAAGGAAGGCAAAATATTTGTTCTAGGATACTACTACCAAGACAAGAAC-A-AG-TCC 431
| ||| ||||| | |||| | | || |||||||||||| | ||| || | || |||
Sbjct 466 GCCAA-AAAGGCCGTAGCTTTGATGTCGGGTACTACTACCAA-A-AAG-ACAAGAGATCC 521
Query 432 TGCAGT-AAAAGCTACAAAGTTTTGTGCT-TGAGTCCTTTTGGC-AATGATACAGAAATC 488
|| | | || ||||||||| | ||||||| | | || | | | ||| || ||||||
Sbjct 522 TGGA-TCAAGAGCTACAAACTCTTGTGCTATTA-TCGTGGTACCAAAT-ATTTTGAAATC 578
Query 489 TACGAGTTAAACTCTGATTCGTGGAGGAGGATTCCTGATGGT-CCA-GGCTACTAC---- 542
||||| || |||||||||| | ||||||||| ||||| | | ||| | ||
Sbjct 579 TACGATTTTGACTCTGATTCAT---GGAGGATTCTTGATGATATTATCGCT-CCACGGGG 634
Query 543 -A-T-TT-CAGACTCTGG-CCATATG-GTGTCTTTGAAGGGAAATACTTACTGGTTTGCT 596
| | || | |||| || | || | |||||| |||| ||||||||||||||||| |||
Sbjct 635 GAGTATTGGATACTC-GGAACTTA-GCGTGTCTCTGAAAGGAAATACTTACTGGTTCGCT 692
Query 597 ---CGTG-AGATAGCAA-AACCGCATCTCGGCATATCCTTGCTCGGATTTGATTTTCAGA 651
||| | | || || | | || | | |||||| |||||| |||||||||| | |
Sbjct 693 AAAGGTGTA-ACAG-AAGAGCGGCCCCGCACCATATCATTGCTCAAATTTGATTTTTATA 750
Query 652 CAGAGAAATCATCATCTTTTTGTTTGCCTCTTCCCTATCAGGGTCCAC-TC-TATGAAAT 709
||||| || ||| | | || ||| ||||||||||||| ||| | || | | ||
Sbjct 751 CAGAG-AA--ATC-TGTACCTG--TGCTTCTTCCCTATCAGAGTCGTCGTCTTTTCCAAG 804
Query 710 TTTG-AGTCTTTCCGTCGTTAGAGAAGAGAAACTTTCCGTGTTTA-TACAACCCGTTTAT 767
| | || ||||| || ||||||||||| |||||||| ||| ||| | || | | | |
Sbjct 805 CTAGTAGCCTTTCTGTTGTTAGAGAAGATAAACTTTCTGTG-TTATTGCAGCTAGATCAA 863
Query 768 ACATCCAAGACTGAGATATGGGTGACGAGTAAGATTGATGACACCACCACCAAAGGAGCA 827
| ||||||||||||||||||||||| | | ||||||||| ||||||| || ||||||
Sbjct 864 AGTTCCAAGACTGAGATATGGGTGACAAATGTGATTGATGAGACCACCA--AA-GGAGCA 920
Query 828 GTTTCTTGGACCAAGGTCTTATCATTGGAAAAGAAAAGAAAAATTACGGATCTTCAAATC 887
||||||||||||||||||||| ||||||| || | || | ||| | |||
Sbjct 921 GTTTCTTGGACCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTT-CAGAT-TGGGAATG 978
Query 888 AAGGACCCTGATCTTCAAATTACGGATCAGGAAAAGAAAATCGTCCTGTGT-TGCGAGAG 946
| ||| | ||||| | | || |||| |||||| ||||| ||| | || ||||
Sbjct 979 ATGGAAGTT--TCTTCC--T-A-GGCG-AGGATAAGAAAGTCGTCATGT-TCTGTGAGAA 1030
Query 947 ATGGATGGTCATGGAAGACGAGACCAAG-TCCATCGACAAGATATACATTCTCGGGGAGG 1005
|| ||| | ||| | || | | ||| || | |||| | | |||||| | |||||||
Sbjct 1031 ATTGATTG--ATG-A-GA--A--C-AAGGTCAAA-GACATGGTCTACATTGTTGGGGAGG 1080
Query 1006 ATAATAAAGTCATTGAAGTGAGTTTTGGTGTGGGT-ATAACTGAA-GGATGTTGGCCAGC 1063
||||| |||| |||||| | ||||| || | | | || || | |||||| || |||
Sbjct 1081 ATAATGTTGTCACAGAAGTGGGATTTGGAGTAGATGA-AA-TGGATGGATGTCGGGCAGT 1138
Query 1064 TATTCTTAATTATGTTCCAAGTTTGGCTCGAGTTGAGCCAGCTGGGGGCAAAAGAAAAAG 1123
|||||||||||||||||||||||||| || | | |||| |||||| ||||| || |||||
Sbjct 1139 TATTCTTAATTATGTTCCAAGTTTGGTTCAAATCGAGCGAGCTGGAGGCAACAGGAAAAG 1198
Query 1124 AGGTG-ACTAAACAACC-TCTACATGTAAT 1151
||| | |||||||| | ||||||||||||
Sbjct 1199 AGG-GCACTAAACA-CTGTCTACATGTAAT 1226
> AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: synergid; CONTAINS
InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527),
F-box associated interaction domain (InterPro:IPR017451),
Protein of unknown function DUF547 (InterPro:IPR006869);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019
FORWARD LENGTH=2500
Length=2500
Score = 134 bits (72), Expect = 2e-30
Identities = 239/312 (77%), Gaps = 41/312 (13%)
Strand=Plus/Plus
Query 564 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCTCGTGAGAT--AGCA-AAACCGCATCTC 620
||||||||||||||||||||||||||||| ||| | || | | || |||| || | |
Sbjct 1819 GTGTCTTTGAAGGGAAATACTTACTGGTTGGCTA-T-AGTTGTAACAGAAAC-GCCCCGC 1875
Query 621 GGCATATCCTTGCTCG-GATTTGATTTT-CAGACAGAGAAATCA-TCATCTTTTTGTTTG 677
|||||| |||||| | ||||||||| || | ||||||||| | | ||| || |
Sbjct 1876 ACCATATCATTGCTCAAG-TTTGATTTTTCA-ATAGAGAAATCTGT-A-CTT---GT--G 1926
Query 678 CCTCTTCCCTATCAGGGTC--CA----C-TC-TAT-GAAATTT-TGAGTCTTTCCGTCGT 727
|||||||||||||| ||| || | || | | ||| | | || |||||||| ||
Sbjct 1927 CCTCTTCCCTATCATAGTCTTCAGAGTCGTCGTTTTGAAGCTAGT-AGCCTTTCCGTTGT 1985
Query 728 TAGAGAAGAGAAACTTTCCGTGTTTAT-ACAACCCGTTTATACA-T-CCAAGACTGAGAT 784
|||||||||||||||||| ||||| || ||| | | | ||| | | |||||||||||||
Sbjct 1986 TAGAGAAGAGAAACTTTCTGTGTT-ATTACAGCGAGAT-ATA-AGTTCCAAGACTGAGAT 2042
Query 785 ATGGGTGACGAGTAAGATTGATGACACCACCACCAAAGGAGCAGTTTCTTGGACCAAGGT 844
||||||||| |||||||||||||||||||||| || | | || ||||||| |||| |
Sbjct 2043 ATGGGTGACAAGTAAGATTGATGACACCACCA--AA-GT-G--GTGTCTTGGAGCAAGAT 2096
Query 845 CTTATCATTGGA 856
|||| |||||||
Sbjct 2097 CTTAGCATTGGA 2108
> AT3G18330.1 | Symbols: | F-box family protein | chr3:6291127-6292257
REVERSE LENGTH=1131
Length=1131
Score = 126 bits (68), Expect = 4e-28
Identities = 119/143 (83%), Gaps = 5/143 (3%)
Strand=Plus/Plus
Query 715 GTCTTTCCGTCGTTAGAGAAGAGAAACTTTCCGTGTTTATA-CAACCCGTTTATACATCC 773
|||||||||| ||||||| ||||||||| || || ||||| | | | | | | ||||
Sbjct 758 GTCTTTCCGTTGTTAGAGGAGAGAAACTCGCCTTG-TTATATCGGCGAGATAAGAGATCC 816
Query 774 AAGACTGAGATATGGGTGACGAGTAAGATTGATGACACCACCACCAAAGGAGCAGTTTCT 833
||| |||||||||||||||| | ||||||||||||||||||| || ||||||||||||
Sbjct 817 AAGGCTGAGATATGGGTGACAAATAAGATTGATGACACCACCG--AA-GGAGCAGTTTCT 873
Query 834 TGGACCAAGGTCTTATCATTGGA 856
||||||||||||||| ||||||
Sbjct 874 TGGACCAAGGTCTTAGAATTGGA 896
> AT2G07130.1 | Symbols: | pseudogene, hypothetical protein |
chr2:2955677-2956900 FORWARD LENGTH=1224
Length=1224
Score = 108 bits (58), Expect = 1e-22
Identities = 79/88 (90%), Gaps = 5/88 (6%)
Strand=Plus/Plus
Query 770 ATCCAAGACTGAGATATGGGTGACGAGTAAGATTGATGACACCACCACCAAAGGAGCAGT 829
||||||| |||||||||||||||| | ||||||||||||||||||| || ||||||||
Sbjct 886 ATCCAAGGCTGAGATATGGGTGACAAATAAGATTGATGACACCACCG--AA-GGAGCAGT 942
Query 830 TTCTTGGACCAAGGTCTTA-TCATTGGA 856
||||||||||||||||||| | ||||||
Sbjct 943 TTCTTGGACCAAGGTCTTAGT-ATTGGA 969
> AT3G49980.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18530329-18531477 REVERSE LENGTH=1149
Length=1149
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 564 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCT 596
|||||||||||||||||||||||||||||||||
Sbjct 610 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCT 642
> AT3G20690.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7231570-7232682 REVERSE LENGTH=1113
Length=1113
Score = 56.5 bits (30), Expect = 5e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 564 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCT 596
|||||||||||||||||||||||||||| ||||
Sbjct 613 GTGTCTTTGAAGGGAAATACTTACTGGTATGCT 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5