BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952180

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromos...   265    2e-70


> AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromosome 
3 | chr5:19701803-19709216 FORWARD LENGTH=3965
Length=3965

 Score =  265 bits (143),  Expect = 2e-70
 Identities = 160/168 (95%), Gaps = 1/168 (1%)
 Strand=Plus/Plus

Query  21   ATGGAGGAAGATGAGCCAATTCGCGGCGGCGAGTCTGAGCCTGACCAGAGGAAATCTGGA  80
            ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||
Sbjct  106  ATGGAGGAAGATGAGCCAATGGGCGGCGGCGAGTCTGAGCCTGAGCAGAGGAAATCTGGA  165

Query  81   ACTCCGAGACTTTACATTAAAGAGCTTGTGATGCGAAACTTCAAATCATATGCTGGTGAA  140
            ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  166  ACTCCGAGACTTTACATAAAAGAGCTTGTCATGAGAAACTTCAAATCATATGCTGGTGAA  225

Query  141  CAACGCGTCGGTCCTTTCCACAAGAGTTTTTCTGCGGTGGTCG-ACCT  187
            ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  226  CAACGCGTCGGTCCTTTCCACAAGAGTTTTTCTGCGGTGGTTGGACCT  273



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13019346991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5