BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952182
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48590.1 | Symbols: | Protein of unknown function (DUF760) ... 1698 0.0
AT5G48580.1 | Symbols: FKBP15-2 | FK506- and rapamycin-binding ... 387 2e-106
> AT5G48590.1 | Symbols: | Protein of unknown function (DUF760)
| chr5:19698407-19699947 FORWARD LENGTH=1280
Length=1280
Score = 1698 bits (919), Expect = 0.0
Identities = 1030/1083 (95%), Gaps = 10/1083 (1%)
Strand=Plus/Plus
Query 4 ttttttGCTtctctctttcaatggacacctctctctcccaccacggatctctctcc-ttt 62
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 50 TTTTTTGCTTATCTCTTTCAATGGACACCTCTCTCTCCCACCACGGATCTCTC-CCGTTT 108
Query 63 ctcCCGTCGCGCCGCAATTCCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 122
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 109 CCCCCATCGCGCCGCAATTTCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 168
Query 123 TCGCGTCGTAAGGTCCGGTACGATTCGTTGGTGGTGGTTGCGGCTACGTCTTCGGGACAG 182
|||||||||||| |||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 169 TCGCGTCGTAAGTTCCGATACGATTCGTTGGTGGTGGTTTCCGCTGCGTCTTCGGGACAG 228
Query 183 AGCATCGACGCGCCTCTGGTTCCACGCTCGGCTCAGGGAAGGTTTCTAAGTACCGTCTTG 242
||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 229 AGCATCGACGCGCCTCTAGTTCCACGGTCGCCTCAGGGAAGGTTTCTAAGTTCCGTCTTG 288
Query 243 GTGAAAAAGCGGCAGCTCTTTCACTTCGCCGTCGCTGATTTGCTTAAACAGCTTGCCGAT 302
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 289 GTGAAAAAACGGCAGCTCTTTCATTTCGCCGTCGCTGATTTGCTTAAACAGCTCGCTGAT 348
Query 303 GATAAGGAAGCTTCCTTATCTCGTATGTTCCTTAGTTCTGGTTCCGATGAAGCTTCTCTA 362
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 349 GATAAGGAAGCTTCCTTATCTCGTATGTTCCTTAGTTATGGTTCCGATGAAGCTTCCCTC 408
Query 363 CACAGAAGGATAGCTCAACTTAAGGAGAGTGATTGCCAAACAGCAATTGAAGACATAATG 422
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 409 CACAGAAGGATAGCTCAACTTAAGGAGAGTGATTGCCAAATTGCAATTGAAGACATAATG 468
Query 423 TACATGTTGATCTTGTACAAATTCTCAGAGATAAGAGTGCCTCTTGTTCCAAAGCTTCCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TACATGTTGATCTTGTACAAATTCTCAGAGATAAGAGTGCCTCTTGTTCCAAAGCTTCCC 528
Query 483 AGTTGCATTTACAACGGAAGACTCGAGATCTCGCCTTCAAAAGACTGGGAACTGGAGTCA 542
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 529 AGTTGCATTTACAACGGAAGACTCGAGATCTCGCCTTCGAAAGACTGGGAACTTGAGTCA 588
Query 543 ATCCATAGCTTTGACGTTCTTGAACTCATCAAAGAACACAGTAACGCAGTCATCAGTTTA 602
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 589 ATCCATAGCTTTGACGTTCTTGAACTCATCAAAGAACATAGTAACGCAGTCATCAGTTTA 648
Query 603 CGAGTGAATTCGAGTTTGACTGACGATTGTGCAACAACGGAGATAGATAAGAATCATCTC 662
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 649 AGAGTGAATTCGAGTTTGACTGACGATTGTGCGACAACGGAGATAGATAAGAATCGTCTC 708
Query 663 AGTAAAGTATACACAGCATCGGTCTTGTATGGATACTTCTTGAAATCCGCTTCTCTTAGA 722
||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||
Sbjct 709 AGTAAAGTATACACAGCTTCGGTCTTATATGGATACTTTTTAAAATCTGCTTCTCTTAGA 768
Query 723 CACCAACTCGAATGCTCATTATCACAACACCATGGAAGTTTCACCAAGCAACTGAGACAT 782
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 769 CACCAACTCGAATGCTCATTATCACAACACCATGGAAGTTTCACTAAGCAACTGAGGCAT 828
Query 783 TACATTTCTGAGTTCGATCCCAAGATATTGCAGAGATGCGCAAAGCCAAGGTCACATGAA 842
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 829 TACATTTCTGAGTTCGATCCCAAGATATTGCGGAGATGCGCAAAACCAAGGTCACATGAA 888
Query 843 GCAAAAAGCCTGATAGAGAAGCAGAGCTTAGCTCTTTTCGGTCCTGAGGAAAGCAGCAAA 902
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 889 GCAAAAAGCCTGATAGAAAAGCAGAGTTTAGCTCTTTTTGGTCCTGAGGAAAGCAGCAAA 948
Query 903 GAGAGCATTGTGACATCGTTTTCT-GACCTGAAGAGGCTGCTTCTTGAGGCTGTGGCATT 961
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||
Sbjct 949 GAGAGCATTGTGACATCGTTTTCTAG-CCTGAAGAGGTTGCTTCTTGAGGCTGTGGCGTT 1007
Query 962 TGGTACGTTTCTATGGGACACAGAGGAGTATGTAGATGGCGCGTTTAAGCTCAAGGAGAA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TGGTACGTTTCTATGGGACACAGAGGAGTATGTAGATGGCGCGTTTAAGCTCAAGGAGAA 1067
Query 1022 TGAGAATGCAGAGGAAGAAGA-AAATAGCAGTGTATGAAGTATG-A--A-CCAGTTTGCT 1076
||||||||||||||||||| | |||||||||||| ||||||||| | | ||||||||||
Sbjct 1068 TGAGAATGCAGAGGAAGAA-ACAAATAGCAGTGTTTGAAGTATGTATGAACCAGTTTGCT 1126
Query 1077 AGA 1079
|||
Sbjct 1127 AGA 1129
> AT5G48580.1 | Symbols: FKBP15-2 | FK506- and rapamycin-binding
protein 15 kD-2 | chr5:19695929-19698712 REVERSE LENGTH=1179
Length=1179
Score = 387 bits (209), Expect = 2e-106
Identities = 242/258 (94%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 4 ttttttGCTtctctctttcaatggacacctctctctcccaccacggatctctctcc-ttt 62
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 257 TTTTTTGCTTATCTCTTTCAATGGACACCTCTCTCTCCCACCACGGATCTCTC-CCGTTT 199
Query 63 ctcCCGTCGCGCCGCAATTCCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 122
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CCCCCATCGCGCCGCAATTTCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 139
Query 123 TCGCGTCGTAAGGTCCGGTACGATTCGTTGGTGGTGGTTGCGGCTACGTCTTCGGGACAG 182
|||||||||||| |||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 138 TCGCGTCGTAAGTTCCGATACGATTCGTTGGTGGTGGTTTCCGCTGCGTCTTCGGGACAG 79
Query 183 AGCATCGACGCGCCTCTGGTTCCACGCTCGGCTCAGGGAAGGTTTCTAAGTACCGTCTTG 242
||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 78 AGCATCGACGCGCCTCTAGTTCCACGGTCGCCTCAGGGAAGGTTTCTAAGTTCCGTCTTG 19
Query 243 GTGAAAAAGCGGCAGCTC 260
|||||||| |||||||||
Sbjct 18 GTGAAAAAACGGCAGCTC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5