BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952183

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48580.1 | Symbols: FKBP15-2 | FK506- and rapamycin-binding ...   869    0.0  


> AT5G48580.1 | Symbols: FKBP15-2 | FK506- and rapamycin-binding 
protein 15 kD-2 | chr5:19695929-19698712 REVERSE LENGTH=1179
Length=1179

 Score =  869 bits (470),  Expect = 0.0
 Identities = 510/530 (96%), Gaps = 0/530 (0%)
 Strand=Plus/Plus

Query  10   TGAGAGGCGATTATGGCGAGCAAGATGAGTCTCCATTGCTCTCTCTTTTTGATCTTCTTC  69
            ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct  449  TGAGAAGCGATTATGGCGAGCAAGATGAGTCTCCGTTACTCTCTCTTTTTGATCTTCTTC  508

Query  70   TCTCTCATTTCACTCCAAGGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATC  129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  509  TCTCTCATTTCACTCCAAGGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATC  568

Query  130  GGTGTCAAGTTTAAGCCAAAAACATGTGAAGTTCAGGCTCATAAAGGTGATACGATCAAG  189
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  569  GGTGTCAAGTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAG  628

Query  190  GTGCACTATAGGGGGAAACTTACTGATGGAACTGTATTCGATTCAAGCTTTGAAAGGGGT  249
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  629  GTGCACTATAGGGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGT  688

Query  250  GATCCGTTTGAGTTTAAACTAGGAAGTGGTCAGGTTATCAAAGGTTGGGATCAAGGTTTG  309
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  689  GATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGGTTGGGATCAAGGTTTG  748

Query  310  TTAGGAGCTTGTGTAGGTGAGAAGAGGAAGTTAAAGATACCTGCAAAACTTGGATATGGA  369
             ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  749  CTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAAAGATACCTGCTAAACTTGGATATGGA  808

Query  370  GAGCAAGGCTCTCCACCTACTATCCCCGGTGGTGCGACACTGATATTTGACACAGAGCTT  429
            || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  809  GAACAAGGCTCTCCACCTACTATCCCCGGTGGTGCAACACTGATCTTTGACACAGAGCTT  868

Query  430  ATTGCGGTAAATGAAAAACCAGCTGGTGGTGAAGAAGACGGAGGAGATGAAGACGATGAG  489
            |||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct  869  ATTGCGGTAAATGAAAAACCAGCTGGTGGTGAAGAATACGGAGGGGATGAAGATGATGAG  928

Query  490  GGATATGGAAATGACGAGCTATGATCCGGTCTCTGTTCTCCAACGGTTTT  539
            ||||||||||||||||||||||||||||||||| |||||  |||| ||||
Sbjct  929  GGATATGGAAATGACGAGCTATGATCCGGTCTCCGTTCTTTAACGATTTT  978



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25820351558


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5