BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952186

Length=856
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63820.1 | Symbols:  | Protein of unknown function (DUF626) ...   206    4e-52


> AT5G63820.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr5:25541576-25542893 FORWARD LENGTH=678
Length=678

 Score =  206 bits (111),  Expect = 4e-52
 Identities = 186/220 (85%), Gaps = 13/220 (6%)
 Strand=Plus/Plus

Query  177  ATAGTTAGGCCTCGTTTGCGCGA-TGATTATGATCATCTCACCCTTTATGCTAGGCTTGG  235
            ||||||| ||||| | || || | ||||||||   || ||||||||||||||| ||||||
Sbjct  103  ATAGTTACGCCTCCTGTGAGC-ACTGATTATG---ATGTCACCCTTTATGCTAAGCTTGG  158

Query  236  TCTCTACTGCTACAATTTTCACAAGGGGACAAGCTTAAAGTTTGTACGCTGGGAAAAGTA  295
             || ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct  159  ACTTTACTGCTACAATTTTCAAAAGGGGACAAACTTAAAGTTTGTGCGCTGGGAAAAGTA  218

Query  296  TAATAC-TAT--GTACACTTCTTAC-TTGGACTA-CTACATCACTTTGGAGGCAATGGAT  350
            |||||| | |  |  |||| ||||| ||| | || |||||||||||||||||||||||||
Sbjct  219  TAATACGTCTACGGGCACTGCTTACATTG-A-TAACTACATCACTTTGGAGGCAATGGAT  276

Query  351  CCGGCCTCCAACTGTGTCTTCTCTTT-CAAATTTTGTTCA  389
            ||| ||| ||||| |||||||||||| || | | ||||||
Sbjct  277  CCGTCCTGCAACTCTGTCTTCTCTTTTCAGACTGTGTTCA  316


 Score =  193 bits (104),  Expect = 3e-48
 Identities = 155/180 (86%), Gaps = 2/180 (1%)
 Strand=Plus/Plus

Query  413  CAAGCCTGTGGATGATTATTGGGACCGGGATGAAGAAATAGTTCCCTTCTACACAGGTGA  472
            |||| ||||| |||| ||||  |||||| |||| | ||| | |||||||||||||||| |
Sbjct  393  CAAGTCTGTGAATGAATATTTTGACCGGCATGAGGCAATGGATCCCTTCTACACAGGTAA  452

Query  473  AATGCCCAAATGGTTGTCTGATGAGGCCTTGACCAGTGACAATAAAAAGTATTACGTGGT  532
            |||||||||||||||||||||||| |||||| ||  |||||| |||||||||||||||||
Sbjct  453  AATGCCCAAATGGTTGTCTGATGACGCCTTGGCCTTTGACAACAAAAAGTATTACGTGGT  512

Query  533  GCAAGAATCAGAGCT-GCATGAGAATGAATGGCTGCATCTATTCATCGAGATCGCATTCT  591
            |||||||||||| || |||||||||||| ||||||| | ||||||| || || | |||||
Sbjct  513  GCAAGAATCAGA-CTTGCATGAGAATGACTGGCTGCTTGTATTCATGGAAATGGTATTCT  571


 Score =  106 bits (57),  Expect = 4e-22
 Identities = 65/69 (94%), Gaps = 0/69 (0%)
 Strand=Plus/Plus

Query  754  GTGATCACAAAGCTATCATAAGGAAAACCATGGATGGGATAACAGAACATATGAGTCTTG  813
            |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct  599  GTGATCACAAAGCTATCATAAGGAAAACCATGGATGGGGTACCAGAACACATGAGTCTTG  658

Query  814  AAGTTGCTT  822
            || ||||||
Sbjct  659  AAATTGCTT  667



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41744576157


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5