BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952187

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34860.1 | Symbols:  | Plant neutral invertase family protei...   224    4e-58


> AT4G34860.1 | Symbols:  | Plant neutral invertase family protein 
| chr4:16609746-16612907 REVERSE LENGTH=2330
Length=2330

 Score =  224 bits (121),  Expect = 4e-58
 Identities = 135/142 (95%), Gaps = 0/142 (0%)
 Strand=Plus/Plus

Query  87    AATTATCGATCTCATAGAATCTCGCTTGGAAGAGTTGGTTGGAGAAATGCCACTGAAAGT  146
             |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1668  AATTATGGATCTGATAGAATCTCGCTGGGAAGAGTTGGTTGGAGAAATGCCACTGAAAGT  1727

Query  147   TTGCTATCCCGCAATAGGAAGCCATGAATGGAGAATAGTAACTGGTTGTGACCCTAAAAA  206
             |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct  1728  TTGCTATCCCGCCATAGAAAGCCATGAATGGAGAATAGTAACTGGTTGTGACCCCAAAAA  1787

Query  207   CACTCGATGGAGCTACCACAAT  228
             |||||| |||||||||||||||
Sbjct  1788  CACTCGGTGGAGCTACCACAAT  1809



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15934876433


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5