BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952188

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34860.1 | Symbols:  | Plant neutral invertase family protei...   324    6e-88


> AT4G34860.1 | Symbols:  | Plant neutral invertase family protein 
| chr4:16609746-16612907 REVERSE LENGTH=2330
Length=2330

 Score =  324 bits (175),  Expect = 6e-88
 Identities = 292/346 (84%), Gaps = 17/346 (5%)
 Strand=Plus/Plus

Query  162   TGAATGCGAGAAGAGTATACAGCTCATACTAAGCATGTGCCTGTCTGAGGGATTTGATAT  221
             ||||||| ||||| |||| | ||| ||||| ||| |||| ||||||||||||||||||| 
Sbjct  1155  TGAATGCCAGAAGGGTATTCGGCTGATACTTAGCCTGTGTCTGTCTGAGGGATTTGATAC  1214

Query  222   CTTACATACTCTTTTATGCGATGATGGTTGTTGTTTGATTGATCATAGTACGGGAGTTTA  281
             ||| |  ||||| ||||| | ||||||||| ||| ||||||||| ||| | |||||||||
Sbjct  1215  CTTCCCCACTCTCTTATGTGCTGATGGTTGCTGTATGATTGATCGTAGGATGGGAGTTTA  1274

Query  282   TGGCTATCTAATAGAGATTCAAGCCCTTTTCTTTATGGCCTTAAGGTGTGCCGTGCTACT  341
             ||| || |  |||||||||||||||||||||||||||||||||||||||||| |||| | 
Sbjct  1275  TGGTTACCCGATAGAGATTCAAGCCCTTTTCTTTATGGCCTTAAGGTGTGCCTTGCT-C-  1332

Query  342   ACTGCTTAAAGAAGATGGAGAAGGTACAA-AAATGGTGGAACAGATAATTAAGCAACTTC  400
              ||||||||| | || |||||||||| || ||||||||||||||||| | |||| |||||
Sbjct  1333  -CTGCTTAAACATGACGGAGAAGGTA-AAGAAATGGTGGAACAGATAGTGAAGCGACTTC  1390

Query  401   ATGCATTGAG---------GAG---CTACTTTTGGCTAGACTTGAAGCAACATAATGACA  448
             ||||||||||         |||   |||||||||||||||||||||||| | ||||||||
Sbjct  1391  ATGCATTGAGCTACCACATGAGGAGCTACTTTTGGCTAGACTTGAAGCAGCTTAATGACA  1450

Query  449   TTTATCAATATAAGACAGAGGAATAATCTCACAGTGCTGTCAACAA  494
             |||| | |||||||||||||||||| ||||||| ||||||||||||
Sbjct  1451  TTTACCGATATAAGACAGAGGAATACTCTCACACTGCTGTCAACAA  1496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559814943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5