BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952197 Length=193 Score E Sequences producing significant alignments: (Bits) Value AT3G18560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 263 5e-70 > AT3G18560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49000.1); Has 95 Blast hits to 95 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6393910-6394785 FORWARD LENGTH=876 Length=876 Score = 263 bits (142), Expect = 5e-70 Identities = 160/169 (95%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1 CTTTTTCACTAACCGGAGAAATGGAGAGATCAACGCCGGAACATGTCTCCTCCGCACACA 60 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 55 CTTTTTCACTTACCGGAGAAATGGAGAGATCGACGCCGGAACATGTCTCCTCCGCACACA 114 Query 61 AGCGCCTAAGTGTGAGCTTCCTCGTATCTCTCATGGTAATTTGTGCTAGACACGCAAGCA 120 ||||| |||| |||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 115 AGCGCATAAGCGTGAGCTTCCTCGTGTCTCTCATGGTACTTTGTGCTAGACACGCAAGCA 174 Query 121 GAGTTTCCAAGAAGCTTAAACCTAAGACGAGTCGGAAGCAAACTCATCT 169 |||||||||||||||||||||| |||| || |||||||||||||||||| Sbjct 175 GAGTTTCCAAGAAGCTTAAACCCAAGAAGACTCGGAAGCAAACTCATCT 223 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8551229670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5