BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952197
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 263 5e-70
> AT3G18560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G49000.1);
Has 95 Blast hits to 95 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6393910-6394785
FORWARD LENGTH=876
Length=876
Score = 263 bits (142), Expect = 5e-70
Identities = 160/169 (95%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1 CTTTTTCACTAACCGGAGAAATGGAGAGATCAACGCCGGAACATGTCTCCTCCGCACACA 60
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 55 CTTTTTCACTTACCGGAGAAATGGAGAGATCGACGCCGGAACATGTCTCCTCCGCACACA 114
Query 61 AGCGCCTAAGTGTGAGCTTCCTCGTATCTCTCATGGTAATTTGTGCTAGACACGCAAGCA 120
||||| |||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 115 AGCGCATAAGCGTGAGCTTCCTCGTGTCTCTCATGGTACTTTGTGCTAGACACGCAAGCA 174
Query 121 GAGTTTCCAAGAAGCTTAAACCTAAGACGAGTCGGAAGCAAACTCATCT 169
|||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 175 GAGTTTCCAAGAAGCTTAAACCCAAGAAGACTCGGAAGCAAACTCATCT 223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8551229670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5