BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952201

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65165.1 | Symbols: SDH2-3 | succinate dehydrogenase 2-3 | c...   418    2e-116


> AT5G65165.1 | Symbols: SDH2-3 | succinate dehydrogenase 2-3 | 
chr5:26034422-26035927 REVERSE LENGTH=1028
Length=1028

 Score =  418 bits (226),  Expect = 2e-116
 Identities = 277/302 (92%), Gaps = 2/302 (1%)
 Strand=Plus/Plus

Query  19   AGAGAATGGCGACTGTCTTGCGGTTTTTAGGGCGTAGAATCTGCAATCCAGCGGCGGAGA  78
            |||||||| || ||||||||||||| || ||||| |||||||| ||||||||||||||||
Sbjct  1    AGAGAATGTCGTCTGTCTTGCGGTTGTTGGGGCGGAGAATCTGTAATCCAGCGGCGGAGA  60

Query  79   AAGTACGTTTGAGCAGTAGCTTAAGCGAG-GGAGGTGATTTTCCGGTCTTAAAAGGCCAG  137
            |||| ||||||||||||||| |||||| | || || ||||||||  ||||||| || || 
Sbjct  61   AAGTGCGTTTGAGCAGTAGCCTAAGCG-GTGGTGGAGATTTTCCAATCTTAAATGGACAT  119

Query  138  AAAGCGGCTCAAGACTTATCCAAAGATACTCTAAAGTACCATGAAATAACAAAAGAGAAA  197
            ||||||||||||||||||||||||||||||||||| | ||| || ||||| |||||||||
Sbjct  120  AAAGCGGCTCAAGACTTATCCAAAGATACTCTAAAATCCCAAGACATAACGAAAGAGAAA  179

Query  198  GAAGGCCAACACAAAGAAGCTAAGAAGGAGTTCAAGATTTACAGATGGAATCCTGACAAA  257
            ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| 
Sbjct  180  GAAGGCCAACACAAAGAAGTTAAGAAGGAGTTCAAGATTTATAGATGGAATCCTGACAAG  239

Query  258  CCTAACTCTAAACCATTTCTTCAATCTTTCTTCGTTGATCTTTCCTCTTGTGGTCCCATG  317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CCTAACTCTAAACCATTTCTTCAATCTTTCTTCGTTGATCTTTCCTCTTGTGGTCCCATG  299

Query  318  GT  319
            ||
Sbjct  300  GT  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5