BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952202

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65165.1 | Symbols: SDH2-3 | succinate dehydrogenase 2-3 | c...   623    4e-178


> AT5G65165.1 | Symbols: SDH2-3 | succinate dehydrogenase 2-3 | 
chr5:26034422-26035927 REVERSE LENGTH=1028
Length=1028

 Score =  623 bits (337),  Expect = 4e-178
 Identities = 390/416 (94%), Gaps = 2/416 (0%)
 Strand=Plus/Plus

Query  21   CAATGGAGCCATGGTTAAAGACGAGGAAGCCTCCAAAAGACGGACGTGAACACCGGCAAT  80
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  541  CAATGGAGCCATGGTTAAAGACGAGGAAGCCTCCAAAAGACGGACGCGAACACCGGCAAT  600

Query  81   CACCAAAAGACCGGAAGAAACTAGACGGGCTATACGAATGCATATTGTGCGCGTGTTGTA  140
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601  CACCAAAAGACAGGAAGAAACTAGACGGGCTATACGAATGCATATTGTGCGCGTGTTGTA  660

Query  141  CCACATCATGTCCTTCTTATTGGTGGAACCCTGAGGAGTTTCCAGGACCCGCGGCTTTAC  200
            ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  661  CCACATCATGTCCTTCTTATTGGTGGAACCCCGAGGAGTTTCCAGGACCTGCGGCTTTAC  720

Query  201  TACAAGCGTATCGTTGGATCAGTGATAGCCGTGATGAGTTTGGAGAAGAGAGACTTCAGG  260
            |||||||||| ||||||||||| |||||||| ||||| |   |||||||||| || ||||
Sbjct  721  TACAAGCGTACCGTTGGATCAGCGATAGCCGCGATGAATACAGAGAAGAGAGGCTACAGG  780

Query  261  CGATAACTGAGAATCAAACCAAAGTATATAGATGCAGAGCAATCAAGAACTGTACGGCCA  320
            | |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  781  CAATAACTGAGAGTGAAACCAAAGTATATAGATGCAGAGCAATCAAGAACTGTACGGCCA  840

Query  321  CTTGTCCTAAAGGACTTAATCCAGCTAGTGCTATTTTGAAAATGAAGTCTAAGCATTTTC  380
            ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct  841  CTTGTCCTAAAGGACTTAACCCAGCTAGTGCCATTTTGAAAATGAAGTCTAAGCATTTGC  900

Query  381  TCTCCGATCCGGTT-GTGAGAACCGAGAGTCTCTAGCCTGAACATGACTCGGACCG  435
            ||||||||||| || |||||||| |||||| |||||| | ||||||||| ||||||
Sbjct  901  TCTCCGATCCG-TTAGTGAGAACAGAGAGTGTCTAGCTTCAACATGACTTGGACCG  955



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5