BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952205

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50860.1 | Symbols:  | Protein kinase superfamily protein | ...   427    3e-119


> AT5G50860.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:20693463-20697039 REVERSE LENGTH=2114
Length=2114

 Score =  427 bits (231),  Expect = 3e-119
 Identities = 273/293 (93%), Gaps = 4/293 (1%)
 Strand=Plus/Plus

Query  1    GCTCTTCTCGCCGGCCGGGGATGAGCCTCCGTATGCCGGAAGGATGGCCACCGTGGCTGA  60
            ||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||| |
Sbjct  283  GCTCTTCTCGCCGTCCGGGGATGAGTCTCCGTACGCCGGAAGGATGGCCACCTTGGCTTA  342

Query  61   TTTCTGCTTGCGGCGATTCGATCAAAGACTTAACACCTCGCAGAGCCACCACATACGAAA  120
            || ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  343  TTGCTGCTTGTGGCGATTCGATCAAAGACTTAACACCTCGCAGAGCTACCACATACGAAA  402

Query  121  AGCTCGAGAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAGGCGAAAAATTTATTGA  180
            ||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct  403  AGCTCGAGAAGATTGGGCAAGGAACGTATAGCAATGTGTACAAGGCGAAAGATTTATTGA  462

Query  181  CTGGGAAGATTGTAGTTTTGAAGAAAGTTAGGTTTGATAATTTGGAAGCAGAGAGTG--A  238
             |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  |
Sbjct  463  GTGGGAAGATTGTAGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAAGCTGAGAGTGTTA  522

Query  239  --TTCATGGCTAGAGAGATTCTTGTGTTGCGACGGCTTAATCATCCTAATGTT  289
              || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  523  AATTTATGGCTAGAGAGATTCTTGTGTTACGACGGCTTAATCATCCTAATGTT  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15583002190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5