BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952206
Length=206
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible 2 ... 215 1e-55
AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid induci... 143 7e-34
> AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible
2 | chr3:8180768-8181800 REVERSE LENGTH=941
Length=941
Score = 215 bits (116), Expect = 1e-55
Identities = 157/176 (89%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 33 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 91
||| ||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||
Sbjct 495 GATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGACTGGATGTTGGTTGGTGATG 554
Query 92 TTCCATGGGACATGTTCTCTTCTTCCTGTAAAAGACTCGGAATCATGAAAGGAT-----G 146
||||||||||||||||||||||||| ||||| |||||| |||||||||| |||| |
Sbjct 555 TTCCATGGGACATGTTCTCTTCTTCTTGTAAGAGACTCAGAATCATGAAGGGATCCGACG 614
Query 147 CTCCTGCTCTAGACTCTTCCTTATGATCTACAGAAGATGAGAAGCTTTTGTTTAAA 202
|||||||||||||||||||||||||||| | ||||| |||||| ||||||| ||||
Sbjct 615 CTCCTGCTCTAGACTCTTCCTTATGATCCAGAGAAGCTGAGAATCTTTTGTCTAAA 670
> AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid inducible
| chr4:8361058-8361986 FORWARD LENGTH=837
Length=837
Score = 143 bits (77), Expect = 7e-34
Identities = 103/115 (90%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 33 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 91
||| |||||||||||| || || || || ||||||||||||||||||||||| |||||||
Sbjct 495 GATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATG 554
Query 92 TTCCATGGGACATGTTCTCTTCTTCCTGT-AAAAGACTCGGAATCATGAAAGGAT 145
|||||||||||||||||||||| || ||| |||| |||| |||||||||||||||
Sbjct 555 TTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGAAAGGAT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9205147233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5