BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952212

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39460.1 | Symbols: ATRPL23A, RPL23A, RPL23AA | ribosomal pr...   909    0.0  
  AT2G39445.1 | Symbols:  | Phosphatidylinositol N-acetylglucosam...  73.1    3e-12


> AT2G39460.1 | Symbols: ATRPL23A, RPL23A, RPL23AA | ribosomal 
protein L23AA | chr2:16474923-16476108 FORWARD LENGTH=795
Length=795

 Score =  909 bits (492),  Expect = 0.0
 Identities = 544/568 (96%), Gaps = 8/568 (1%)
 Strand=Plus/Plus

Query  1    TTTCGAGTCTGAAGAATCATTTCGAGCCATGTCTCCGGCTAAAGTTGATACTACCAAGAA  60
            ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  99   TTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGATACTACCAAGAA  158

Query  61   GGCTGATCCTAAGGCTAAGGCCTTGAAGGCGGCAAAGGCTGTGAAATCTGGTC-AGACCT  119
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||
Sbjct  159  GGCTGATCCTAAGGCCAAGGCCTTGAAGGCGGCAAAGGCTGTGAAGTCTGGTCAAG-CCT  217

Query  120  TTAAGAAGAAGGACAAGAAGATTAGGACCAAGGTCACCTTCCACAGGCCAAAGACTCTTA  179
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  TCAAGAAGAAGGACAAAAAGATTAGGACCAAGGTCACCTTCCACAGGCCAAAGACTCTTA  277

Query  180  CCAAGCCCAGAGA-TGGTAAGTACCCAAGAATCAGCGCTACTCCAAGGAACAAGTTGGAT  238
            ||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  278  CCAAGCCTAGA-ACTGGTAAGTACCCAAAAATCAGCGCTACTCCAAGGAACAAGTTGGAT  336

Query  239  CATTACCAAATCCTTAAGTACCCACTCACCACTGAATCTGCAATGAAGAAGATTGAAGAC  298
            || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  337  CACTACCAAATCCTTAAGTACCCACTCACCACTGAATCTGCGATGAAGAAGATTGAAGAC  396

Query  299  AACAACACTCTTGTTTTCATTGTTGACATTCGTGCTGACAAAAAGAAGATTAAGGATGCT  358
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  397  AACAACACTCTTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCT  456

Query  359  GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGGCCTGATGGA  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  457  GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGGCCTGATGGA  516

Query  419  ACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAA  478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  517  ACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAG  576

Query  479  ATTGGCATCATCTAAGTCTCTTATCTATCTTTGCAGTTATAAAGACTCTTGTGGTTTTGT  538
            || ||||||||||||||||   |||||||| |||||||||||||||| ||||||||||||
Sbjct  577  ATCGGCATCATCTAAGTCT---ATCTATCTCTGCAGTTATAAAGACTATTGTGGTTTTGT  633

Query  539  CTCTTGTAGTCTCAGTTTTGCTTT-AAG  565
            |||||||||||||||||||||||| |||
Sbjct  634  CTCTTGTAGTCTCAGTTTTGCTTTTAAG  661


> AT2G39445.1 | Symbols:  | Phosphatidylinositol N-acetylglucosaminyltransferase, 
GPI19/PIG-P subunit | chr2:16470025-16471246 
REVERSE LENGTH=667
Length=667

 Score = 73.1 bits (39),  Expect = 3e-12
 Identities = 43/45 (96%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  1    TTTCGAGTCTGAAGAATCATTTCGAGCCATGTCTCCGGCTAAAGT  45
            |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct  94   TTTCTAGTGTGAAGAATCATTTCGAGCCATGTCTCCGGCTAAAGT  138



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27126439380


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5