BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952219

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49570.1 | Symbols: AtPNG1, PNG1 | peptide-N-glycanase 1 | c...   167    5e-41


> AT5G49570.1 | Symbols: AtPNG1, PNG1 | peptide-N-glycanase 1 | 
chr5:20111859-20116185 REVERSE LENGTH=2438
Length=2438

 Score =  167 bits (90),  Expect = 5e-41
 Identities = 102/108 (94%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  1    TTTTGGAATTTCAATAATCTGAGAAAATGGTTGCTCGCAAATTCGTCGTCCGCCATGAAG  60
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct  35   TTTTGGAATTTCAATAATCTGAGAAAATGGTTGCTCGGAAATTTGTCGTCCGCCATGAAG  94

Query  61   ATTCAAGCTTCGATGTCGACTACGACACTGAAGATGGCCTTCAGGTTT  108
            |||| |||||||||||||||||| ||||||||||||| ||| ||||||
Sbjct  95   ATTCGAGCTTCGATGTCGACTACAACACTGAAGATGGTCTTGAGGTTT  142



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12164795258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5