BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952238

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19200.1 | Symbols:  | proline-rich family protein | chr4:10...   300    5e-81
  AT5G45350.1 | Symbols:  | proline-rich family protein | chr5:18...   135    2e-31


> AT4G19200.1 | Symbols:  | proline-rich family protein | chr4:10498876-10500722 
FORWARD LENGTH=974
Length=974

 Score =  300 bits (162),  Expect = 5e-81
 Identities = 239/272 (88%), Gaps = 21/272 (8%)
 Strand=Plus/Minus

Query  1    CCTCCTCCTCCAAACATACCATGTTTCCCGTGCTTGCCATGCTTTCCATGCTTTCCGTGC  60
            ||||||||||||||||| |||||||| ||   |  |   |||||||||||||||||||||
Sbjct  620  CCTCCTCCTCCAAACATGCCATGTTT-CC---C--G---TGCTTTCCATGCTTTCCGTGC  570

Query  61   TTGAATTTGCCTCCATGCTTTCCATGCTTGAACTTACCATGACCATGACCACCAAAGCCA  120
            ||||||||||||||||||||||| |||||||| ||||||||||||  |   |||||||||
Sbjct  569  TTGAATTTGCCTCCATGCTTTCCGTGCTTGAATTTACCATGACCACCATGGCCAAAGCCA  510

Query  121  TGAGCAGGGCCATGGCCATACCCTCCATGTCCTACAGCATGCCCGTAAGGGTTGTGAGAG  180
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  509  TGAGCAGGGGCATGGCCATACCCTCCATGTCCTACAGCATGCCCGTAAGGGTTGTGAGAG  450

Query  181  GCATGACCAACATGGTGAGCTCCATA-G--GCTGC---TGCA---GC--C-CCTGCTATC  228
            || ||||||||||||||||||||||| |  |||||   ||||   ||  | |||||||||
Sbjct  449  GCGTGACCAACATGGTGAGCTCCATAAGCTGCTGCGGCTGCACCAGCTGCACCTGCTATC  390

Query  229  ATGCCTCCGATTCCACCACTAGAATGTCCTGA  260
            |||||||||| |||||||| ||||||||||||
Sbjct  389  ATGCCTCCGAGTCCACCACCAGAATGTCCTGA  358


> AT5G45350.1 | Symbols:  | proline-rich family protein | chr5:18381837-18383699 
REVERSE LENGTH=862
Length=862

 Score =  135 bits (73),  Expect = 2e-31
 Identities = 163/204 (80%), Gaps = 16/204 (8%)
 Strand=Plus/Minus

Query  44   TTCCATGCTTTCCGTGCTTGAATTTGCCTCCATGCTTTCCATGCTTGAACTTACCATGAC  103
            |||||||||| || |||||||| ||  | || ||||| ||||||||||||||||||||||
Sbjct  564  TTCCATGCTTCCCATGCTTGAACTT--C-CCGTGCTTCCCATGCTTGAACTTACCATGAC  508

Query  104  CATGACCACCAAAGCCATGAGC-AGGGCCATGGCCATACCC-T--CCATGTCCTACAGCA  159
            ||||||||  |  ||||| ||| | | ||||||||| | || |  |||| | | |  |||
Sbjct  507  CATGACCAT-A--GCCAT-AGCCATGACCATGGCCAAAACCGTGACCATATGC-A--GCA  455

Query  160  TGCCCGTAAGGGTTGTGAGAGGC-ATGACCAACATGGTGAGCTCCATAGGCTGCTGCAGC  218
            || ||||||||   ||||||| | |||| | || ||||||||||||||||| ||||||||
Sbjct  454  TGTCCGTAAGGACCGTGAGAG-CTATGAGCTACGTGGTGAGCTCCATAGGCAGCTGCAGC  396

Query  219  CCCTGCTATCATGCCTCCGATTCC  242
             ||||| ||||| || || |||||
Sbjct  395  ACCTGCAATCATACCCCCAATTCC  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5