BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952239

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08470.1 | Symbols: PEX1 | peroxisome 1 | chr5:2735925-27430...   556    4e-158


> AT5G08470.1 | Symbols: PEX1 | peroxisome 1 | chr5:2735925-2743056 
FORWARD LENGTH=3718
Length=3718

 Score =  556 bits (301),  Expect = 4e-158
 Identities = 323/334 (97%), Gaps = 0/334 (0%)
 Strand=Plus/Plus

Query  19    AGCTTCCAATGGCTGATGATATTGACTTAGAGCCTATAGCTTTGATGACTGAAGGCTTCA  78
             ||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  3080  AGCTTCTGATGGCTGATGATATTGACCTAGAGCCTATAGCTTTGATGACTGAAGGCTTCA  3139

Query  79    GTGGAGCTGATCTTCAAGCTCTTCTCTCAGATGCGCAACTTGCAGCTGTACACGAGTATC  138
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3140  GTGGAGCTGATCTTCAAGCTCTTCTCTCAGATGCGCAACTTGCAGCTGTACACGAGTATC  3199

Query  139   TGAACAGAGAAGATAAACCTGAGACCGGAACTACGCCAATAATAACCGATCCTCTTTTGA  198
             ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||
Sbjct  3200  TGAACAGAGAAGATAAACCCGAGACCGGAACTACACCAATAATAACTGATCCTCTTCTGA  3259

Query  199   AGTCGATCGCTTCTAAAACTAAACCATCAGTTTCCGAAACCGAGAAACAAAAGCTCTATG  258
             ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  3260  AGTCGATTGCTTCTAAAACTAAACCATCGGTTTCCGAAACCGAGAAACAAAAGCTCTATG  3319

Query  259   ACATATATAGCCAGTTTCTGGATTCAAGAAAATCGACAAGAGAAGCAAAGGGCAAAAGGG  318
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct  3320  ACATATATAGCCAGTTTCTGGATTCAAGAAAATCGTCAAGAGAAGCAAAGGGCAAAAGAG  3379

Query  319   CAACCTTAGCATAATCAAAGGTATTACAAAGACA  352
             ||||||||||||||||||||||||||||||||||
Sbjct  3380  CAACCTTAGCATAATCAAAGGTATTACAAAGACA  3413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16487821672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5