BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952241 Length=338 Score E Sequences producing significant alignments: (Bits) Value AT5G08490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 542 1e-153 > AT5G08490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:2745208-2747757 REVERSE LENGTH=2550 Length=2550 Score = 542 bits (293), Expect = 1e-153 Identities = 309/317 (97%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 1 CGTGTACAACCTATAATAGGATGGATCTGGGGCACTCAGTTGCAAATCATCTTTTGCAAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2234 CGTGTACAACCTATAATAGGATGGATCTGGGGCACTCAGTTGCAAATCATCTCTTGCAAG 2293 Query 61 CTGAATCTGACGACACCGGAAACCACGTTCTCATATCGAATATGTATGCTGCAGATGCTA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2294 CTGAATCTGACGACACCGGAAACCACGTTCTAATATCGAATATGTATGCTGCAGATGCTA 2353 Query 121 AATGGGAAGGCGTGATGGAGTTGAGAAACCTAATGAAGAAAAGGGAAATGAAAAAGCCAG 180 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2354 AATGGGAAGGCGTGATGGAGTTGAGAAACCTAATGAAGAAAAAGGAAATGAAAAAGCCAG 2413 Query 181 CAGGATGTAGCTGGCTAGAAGTGGATGGGAAAAGGGATGTTTTTGTGTCTGGAGATTGTT 240 | ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| Sbjct 2414 CGGGATGTAGCTGGCTAGAAGTGGATGGGCAAAGGAATGTCTTTGTGTCTGGAGATTGTT 2473 Query 241 CTCACCCTCGTAGAGACAGTATTTTTGACTTAGTCAATGCTTTATATCTTCAGATGAAAG 300 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2474 CTCACCCTCGTAGAGACAGTATTTTTGACTTAGTAAATGCTTTATATCTTCAGATGAAAG 2533 Query 301 AGCCTGTGGTGTTTTAA 317 ||||||||||||||||| Sbjct 2534 AGCCTGTGGTGTTTTAA 2550 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15784073186 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5