BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952246

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28823.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   209    8e-54


> AT5G28823.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; EXPRESSED IN: cultured cell; BEST 
Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) 
family protein (TAIR:AT2G07760.1); Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:10837849-10839826 
REVERSE LENGTH=1707
Length=1707

 Score =  209 bits (113),  Expect = 8e-54
 Identities = 195/233 (84%), Gaps = 12/233 (5%)
 Strand=Plus/Plus

Query  14    GAATGTGATGGCTACTCCCGCAAAGGT-TTTTCAAATTATCACTACCTCGGCTTCAGTGG  72
             ||| ||||||||||||||||||||||| | | |||| || |||||||||  || ||| ||
Sbjct  1356  GAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAA-TAACACTACCTCTACTGCAGGGG  1414

Query  73    TCCAATCTAGTGCTAATAC-T-TTT-CGCAAAGCTTCTAGTTCAAATAAATTTGCAGTGC  129
             || |||||||| ||||||| | ||| ||||||||||||||||||||||||||||| ||||
Sbjct  1415  TCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATAAATTTGCGGTGC  1474

Query  130   TCGATTTAGCATCGGATGTGGTACTGC-CAGATGATTCAGA-A-GGA-GATTTTCTTCCG  185
             | |||||||||||||||||||| |||| | || |||||| | | ||  ||||  ||  | 
Sbjct  1475  TGGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCAAACATGGTTGATT--CTGACA  1531

Query  186   GGTCGGATGATTCAGATGAGGATCTCATTTTGAATCTTAAGTCATCATTTTCA  238
              ||| || ||||||||||||||||||||  ||||||| |||||| ||||||||
Sbjct  1532  AGTCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCA  1584



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10757298286


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5