BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952247
Length=438
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59120.1 | Symbols: ATSBT4.13, SBT4.13 | subtilase 4.13 | ch... 281 3e-75
AT5G58820.1 | Symbols: | Subtilisin-like serine endopeptidase ... 276 1e-73
AT5G58840.1 | Symbols: | Subtilase family protein | chr5:23759... 265 3e-70
AT5G59090.1 | Symbols: ATSBT4.12, SBT4.12 | subtilase 4.12 | ch... 252 2e-66
> AT5G59120.1 | Symbols: ATSBT4.13, SBT4.13 | subtilase 4.13 |
chr5:23864730-23868052 REVERSE LENGTH=2398
Length=2398
Score = 281 bits (152), Expect = 3e-75
Identities = 310/382 (81%), Gaps = 27/382 (7%)
Strand=Plus/Plus
Query 40 TTCCTCTTGCCTCTTCTCATGTCT-CTTTGCATTGTTCTTGAATTCAATCTT-AGGAGTC 97
||||||| ||||| |||||||||| | ||| |||||||||| |||| | || || |||
Sbjct 50 TTCCTCTAGCCTCCTCTCATGTCTAC-TTGTTTTGTTCTTGAGTTCAGT-TTCAGCTGTC 107
Query 98 ACAAATGATCCTCAAGACCAACAGGTGTATGTGGTCTACATGGGATCACTTCCGTCTAGT 157
||| |||| | | ||||||||||| | ||||||||||| |||||| |||| |
Sbjct 108 ACAGATGA---T----A--AACAGGTGTATATAGTCTACATGGGCTCACTTTCGTCCCGA 158
Query 158 GAAGACTACACACCAATGTCTGTCCACATGAATATTCTTCAAGAGGTAACTGGAGAGATC 217
| ||||||||||||| ||| | |||||||||||||||||||||||| || | ||||
Sbjct 159 GCGGACTACACACCAACGTCCGACCACATGAATATTCTTCAAGAGGTCAC-CG-GAGA-- 214
Query 218 GAGAGTTCCATCG-AGAATCGCT-TGGTGAGAAGTTACAAGAGGAGTTTCAACGGGTTCG 275
| ||||| |||| || ||| | ||||||||||||||||||||||||||||||| || |
Sbjct 215 -A-AGTTCGATCGAAG-GTCG-TCTGGTGAGAAGTTACAAGAGGAGTTTCAACGGTTTTG 270
Query 276 CAGCTC-GACTCACTGAATCAGAACGAGAAAAAGTAGCCAAAATGGAGGGAGTTGTGTCT 334
| || | | |||||||| || |||||||||| ||| |||||||||| ||||||||| |||
Sbjct 271 CGGC-CAGGCTCACTGAGTCGGAACGAGAAAGAGTTGCCAAAATGGTGGGAGTTGTTTCT 329
Query 335 GTGTTCCCGAACATGAACTTAAAACTCCAAACGACGACATCTTGGGACTTCATGGGTTTA 394
|| ||||| |||| ||| ||| |||| ||||||||||| ||||||||||||||||| |||
Sbjct 330 GTATTCCCAAACAAGAAGTTACAACTTCAAACGACGACGTCTTGGGACTTCATGGGGTTA 389
Query 395 ATGGAAGGAA-AGAGGACGAAG 415
| |||||||| | || ||||||
Sbjct 390 AAGGAAGGAATAAAG-ACGAAG 410
> AT5G58820.1 | Symbols: | Subtilisin-like serine endopeptidase
family protein | chr5:23751956-23754773 FORWARD LENGTH=2112
Length=2112
Score = 276 bits (149), Expect = 1e-73
Identities = 283/344 (82%), Gaps = 24/344 (7%)
Strand=Plus/Plus
Query 71 TTGTTCTTGAATTCAATCTTAGGAGTCACAAATGATCCTCAAGACCAACAGGTGTATGTG 130
||||| |||| |||| ||| || ||||| | ||||||||||| | |||| ||||||||
Sbjct 34 TTGTTTTTGAGTTCAGTCTCAGCAGTCATAGATGATCCTCAAAATAAACAAGTGTATGTT 93
Query 131 GTCTACATGGGATCACTTCCGTC--TAGTGAAGACTACACACCAATGTCTGTC--CACAT 186
||||||||||| ||||||||||| || || || ||||||||| |||| | | || ||
Sbjct 94 GTCTACATGGGCTCACTTCCGTCTTTACTG--GAATACACACCACTGTC-G-CATCATAT 149
Query 187 GAATATTCTTCAAGAGGTAACTGGAGAGATCGAGAGTTCCATCGAGAA--TCGCTTGGTG 244
|| |||||||||||| || || | ||||| ||||| | | ||| ||| ||||||
Sbjct 150 GAGTATTCTTCAAGAAGTCAC-CG-GAGAT----AGTTCGGT-G-GAAGGTCGTTTGGTG 201
Query 245 AGAAGTTACAAGAGGAGTTTCAACGGGTTCGCAGCTCGACTCACTGAATCAGAACGAGAA 304
|||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||| |
Sbjct 202 AGAAGTTACAAGAGGAGTTTCAACGGTTTCGCGGCCCGACTCACTGAGTCAGAACGA-AT 260
Query 305 AA-AGTAGCCAAAATGGAGGGAGTTGTGTCTGTGTTCCCGAACATGAACTTA-AAACTCC 362
|| ||||||| ||||||||||||||||||||||||| |||||||| |||| | |||||||
Sbjct 261 AAGAGTAGCCGAAATGGAGGGAGTTGTGTCTGTGTTTCCGAACATTAACT-ACAAACTCC 319
Query 363 AAACGACGACATCTTGGGACTTCATGGGTTT-AATGGAAGGAAA 405
|||||||| | |||||||| ||| |||| || || |||||||||
Sbjct 320 AAACGACGGCGTCTTGGGATTTCTTGGGGTTGAA-GGAAGGAAA 362
> AT5G58840.1 | Symbols: | Subtilase family protein | chr5:23759003-23762059
FORWARD LENGTH=2294
Length=2294
Score = 265 bits (143), Expect = 3e-70
Identities = 324/405 (80%), Gaps = 38/405 (9%)
Strand=Plus/Plus
Query 19 AAAA-ATGG-GTAAACGAGCA-ATTTCCTCTTGCCTCTTCTCATGT-CTCTTTG-CATTG 73
|||| |||| | | ||||||| | ||| | ||| ||| | |||||| || ||| | | |
Sbjct 36 AAAAGATGGCG-AGACGAGCAGA-TTCGTTTTGTCTCATATCATGTGTTC-TTGTC-TCG 91
Query 74 TTCTTG-AA-TTCAATCT-TAGGAGTCACAAATGATCCTCAAGACCAACAGGTGTATGTG 130
| ||| || |||| ||| | | ||| ||| ||||| ||||||| |||| ||||||||
Sbjct 92 -T-TTGTAATTTCAGTCTCT-GCAGTGACAGATGATTCTCAAGATAAACAAGTGTATGTT 148
Query 131 GTCTACATGGGATCACTTCCGTC-TAGT-GA--AGACTACACACCAATGTCTGTC--CAC 184
||||||||||| ||||||||||| | | || || |||||||||||||| | | ||
Sbjct 149 GTCTACATGGGCTCACTTCCGTCGT-CTCGACTGGAATACACACCAATGTC-G-CATCAT 205
Query 185 ATGAATATTCTTCAAGAGGTAACTGGAGAGATCGAGAGTTCCATCGAGAA--TCGCTTGG 242
|||| ||||||||||||||| || | |||| | ||||| | | ||| ||| ||||
Sbjct 206 ATGAGTATTCTTCAAGAGGTCAC-CG-GAGA---A-AGTTCGGT-G-GAAGGTCGTTTGG 257
Query 243 TGAGAAGTTACAAGAGGAGTTTCAACGGGTTCGCAGCTCGACTCACTGAATCAGAACGAG 302
|||||||||||||||||||||||||||| || || || ||||||||||| ||||||||||
Sbjct 258 TGAGAAGTTACAAGAGGAGTTTCAACGGTTTTGCGGCCCGACTCACTGAGTCAGAACGAG 317
Query 303 AAAAAGTAGCCAAAATGGAGGGAGTTGTGTCTGTGTTCCCGAACATGAACTTA-AAACTC 361
||| ||||||| ||||||||||||||||||||||||| ||| |||| |||| | ||||||
Sbjct 318 AAAGAGTAGCCGAAATGGAGGGAGTTGTGTCTGTGTTTCCGGACATTAACT-ACAAACTC 376
Query 362 CAAACGACGACATCTTGGGACTTCATGGGTTT-AATGGAAGGAAA 405
||||||||| | |||||||| ||| |||| || || |||||||||
Sbjct 377 CAAACGACGGCGTCTTGGGATTTCTTGGGGTTGAA-GGAAGGAAA 420
> AT5G59090.1 | Symbols: ATSBT4.12, SBT4.12 | subtilase 4.12 |
chr5:23851905-23855275 REVERSE LENGTH=2471
Length=2471
Score = 252 bits (136), Expect = 2e-66
Identities = 299/374 (80%), Gaps = 26/374 (7%)
Strand=Plus/Plus
Query 41 TCCTCTTGCCTCTTCTCATGTCTCTTTGCATTGTTCTTGAATTCAATCTTAGGAGTCACA 100
||| ||||||| | |||||| ||| ||| ||||| |||| |||| ||| || | | ||
Sbjct 59 TCCACTTGCCTATACTCATGGCTCCTTGTTTTGTTATTGAGTTCAGTCTCAGCAAT--CA 116
Query 101 AATGATCCTCAAGACCA-ACAGGTGTATGTGGTCTACATGGGATCACTTCCGTCTAGTGA 159
| || | |||| | |||||||||| | ||||||||||| |||||| ||||| | |
Sbjct 117 TA-GA---TGAAGA-TACACAGGTGTATATAGTCTACATGGGTTCACTTTCGTCTCGCGC 171
Query 160 AGACTACACACCAATGTCTG-TCCACATGAATATTCTTCAAGAGGTAACTGGAGAGATCG 218
||||||| ||||| ||| | | ||||||| |||||||||| |||| || || || |
Sbjct 172 GGACTACATACCAACGTCCGAT-CACATGAGTATTCTTCAACAGGTCAC---AG-GA--G 224
Query 219 AGAGTTCCATCG-AGAATCGCTTGGTGAGAAGTTACAAGAGGAGTTTCAACGGGTTCGCA 277
| ||||| |||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 225 AAAGTTCGATCGAAG-GTCGCTTGGTGAGAAGTTACAAGAGGAGTTTCAACGGCTTCGCA 283
Query 278 GCTC-GACTCACTGAATCAGAACG-AGAAAAAGTAGCCAAAATGGAGGGAGTTGTGTCTG 335
|| | | |||||||| |||||||| | | || | ||| |||| ||||||||||||||||
Sbjct 284 GC-CAGGCTCACTGAGTCAGAACGTACATTAATT-GCCGAAATAGAGGGAGTTGTGTCTG 341
Query 336 TGTTCCCGAACATGA-ACTTAAAACTCCAAACGACGACATCTTGGGACTTCATGGGTTT- 393
||||||| |||| || | ||| ||||||| |||||||| ||||||||||||||||| |
Sbjct 342 TGTTCCCAAACAAGATA-TTACAACTCCATACGACGACGTCTTGGGACTTCATGGGGGTG 400
Query 394 AATGGAAGGAAAGA 407
|| |||||||||||
Sbjct 401 AA-GGAAGGAAAGA 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20810848086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5