BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952254
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59170.1 | Symbols: | Proline-rich extensin-like family pro... 331 6e-90
> AT5G59170.1 | Symbols: | Proline-rich extensin-like family protein
| chr5:23881988-23883122 FORWARD LENGTH=1135
Length=1135
Score = 331 bits (179), Expect = 6e-90
Identities = 253/288 (88%), Gaps = 7/288 (2%)
Strand=Plus/Plus
Query 512 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGACTT- 570
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 627 GAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCC-AATTA 685
Query 571 A-CCCTCATCCACCG-GTG-A-AGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCG 626
| | |||| ||| | | |||||||||| |||||||||||||| |||||||| ||
Sbjct 686 AGAAGT-ATCCTCCGCCAGAAGAGTATCCACCACCGATCAAGACTTATCCTCATCCCCCT 744
Query 627 GTGAAGTATCCACCACCTCCGTACAAGACTTACCCTCATCCGCCGATCAAGACGTATCCT 686
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 745 GTGAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCCGCCGATCAAAACTTATCCT 804
Query 687 CCTCCGAAGGAATGTCCTCCTCCGCCGGTACATTACCCTTTTCCCCCGATCAAGAAATAT 746
|||||||| ||||||||||||||||| | ||||||||||| || |||| |||||||||
Sbjct 805 CCTCCGAAAGAATGTCCTCCTCCGCCTGAACATTACCCTTGGCCTCCGAAAAAGAAATAT 864
Query 747 CCTCCACCGGTTGTGTATCCGTCGCCACCATATAAGAAGTATCCACCG 794
||||||||||||| |||||||||||| ||||||||||| ||||| |||
Sbjct 865 CCTCCACCGGTTGAGTATCCGTCGCCGCCATATAAGAAATATCCTCCG 912
Score = 315 bits (170), Expect = 6e-85
Identities = 220/243 (91%), Gaps = 7/243 (3%)
Strand=Plus/Plus
Query 14 AAGAAAAATGAAGTCTTTTGTAGCTACTTTTGCTCTCGCAGTGTTGGTAACACAAGGAAG 73
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 51 AAGAAAAATGAAGTCTTGTCTAGCTACTTTTGCTCTCGCAGTGTTAGTAACACAAGGAAG 110
Query 74 CATTTTTAGTTTGTGTTTGGCCTCTTCTTCTTCTACAAACTCCTTTTC-TAATTGGTTTC 132
|||||||||||||||||||||||| ||| ||||||||||||| | ||| |||||||||||
Sbjct 111 CATTTTTAGTTTGTGTTTGGCCTCCTCTGCTTCTACAAACTC-TGTTCCTAATTGGTTTC 169
Query 133 ATCATTGGCCGCCGTTTAAATGGCGACCAAAATTTCCATATTCTCCACCTACACCTCCGC 192
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 170 ATCATTGGCCGCCGTTTAAATGGGGACCAAAATTTCCATATTCTCCACCTAAACCGCCGC 229
Query 193 CAA-CTACG---TATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCG 248
||| | | | ||||||||||| | || |||||||| ||||||||||||||||| |||
Sbjct 230 CAATCGA-GAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCACCG 288
Query 249 CCA 251
|||
Sbjct 289 CCA 291
Score = 185 bits (100), Expect = 5e-46
Identities = 198/242 (82%), Gaps = 20/242 (8%)
Strand=Plus/Plus
Query 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA-T 258
||||||||| | |||||| |||||||| ||||| || |||||||||||||||||| || |
Sbjct 552 GTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTATCCTCCGCCAGAA-AAGT 610
Query 259 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGT 318
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 611 ATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGT 670
Query 319 ACCCACCGTCGCCGT-ACGA-G-A-CTTAC-CCTCA----T--CCACCGCCGATCAAAAC 367
| || ||| | | | | || | | | | | || | | ||||| |||||||| ||
Sbjct 671 ATCCTCCG-C-CAATTAAGAAGTATCCTCCGCCAGAAGAGTATCCACCACCGATCAAGAC 728
Query 368 TTACCCTCATCCGCCGGTGAAGTATCCTCCGCC---G-ATCAAAACTTACCCTCATCCGC 423
||| |||||||| || ||||||||||| ||||| | | ||| ||||||||||||||||
Sbjct 729 TTATCCTCATCCCCCTGTGAAGTATCCACCGCCTCCGTA-CAAGACTTACCCTCATCCGC 787
Query 424 CG 425
||
Sbjct 788 CG 789
Score = 174 bits (94), Expect = 1e-42
Identities = 116/127 (91%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA 259
|||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 435 GTATCCTCCACCAGAACAGTATTCACCGCCTTTCAAGAAGTATCCTCCGCCAGAACAGTA 494
Query 260 TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA 319
|||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 495 TCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTATCCACCGCCGATAAAAAAGTA 554
Query 320 CCCACCG 326
|| |||
Sbjct 555 TCCTCCG 561
Score = 169 bits (91), Expect = 5e-41
Identities = 256/330 (78%), Gaps = 34/330 (10%)
Strand=Plus/Plus
Query 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA 259
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 474 GTATCCTCCGCCAGAACAGTATCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTA 533
Query 260 TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA 319
|||||||||||| || ||||||||||||| |||||| |||||||| ||||| || |||||
Sbjct 534 TCCACCGCCGATAAAAAAGTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTA 593
Query 320 CCCACCGTCGCCGTACGAG-A-CTTACCCTC-ATCCA-------CCGCCGATCAAAACT- 368
|| ||| | | | | || | | |||| | ||| | || ||| || |||
Sbjct 594 TCCTCCG-C-CAGAAA-AGTATCC-ACCCCCGATCAAGAAGTATCCTCCGC-CAGAACAG 648
Query 369 TACCCTCATCCGCCGGT---GAAGTATCCTCCGCCGATCAA-AACTTACCCTCATCCGCC 424
|| || | |||||| | ||||||||||||||| || || || | | |||| | |||
Sbjct 649 TATCC--A-CCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAAGT-ATCCTC--C-GCC 701
Query 425 GGT-GAAGTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAATATCCTCCGC 483
| || |||||| || |||||||| ||||| |||||||| || ||||| ||||| ||||
Sbjct 702 AGAAGA-GTATCCACCACCGATCAAGACTTATCCTCATCCCCCTGTGAAGTATCCACCGC 760
Query 484 C---G-ATCAAAACTTACCCTCATCCGCCG 509
| | | ||| ||||||||||||||||||
Sbjct 761 CTCCGTA-CAAGACTTACCCTCATCCGCCG 789
Score = 167 bits (90), Expect = 2e-40
Identities = 119/133 (89%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 512 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGA-CTT 570
||| |||||||| || | ||||||||||| ||||||||||||||||||||||| | | |
Sbjct 237 GAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCACCGCC-ACCAT 295
Query 571 ACCCTCATCCACCGGTGAAGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCGGTGA 630
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 ACGAGCATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGA 355
Query 631 AGTATCCACCACC 643
||||||| |||||
Sbjct 356 AGTATCCTCCACC 368
Score = 148 bits (80), Expect = 6e-35
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 459 CATCCGCCGGTGAAATATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTAT 518
||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 301 CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTAT 360
Query 519 CCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCC 559
||||| ||||||||||||||||||||||| |||||||||||
Sbjct 361 CCTCCACCAGAACAGTATCCACCGCCGATTAAGAAGTATCC 401
Score = 147 bits (79), Expect = 2e-34
Identities = 133/157 (85%), Gaps = 11/157 (7%)
Strand=Plus/Plus
Query 200 GTATCCTCCACCAGAACAA-TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAAT 258
||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 591 GTATCCTCCGCCAGAA-AAGTATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGT 649
Query 259 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA-TATCCACCGCCGATCAAGA 315
|||||||||||||||||||||||||||||||| || || ||||| ||||| | ||||
Sbjct 650 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAAGTATCCTCCGCC-AG-AAGA 707
Query 316 AGTACCCACCGTCGCCGTACGAGACTTACCCTCATCC 352
||| ||||| || | | ||||||| ||||||||
Sbjct 708 -GTATCCACCACCGA--T-CAAGACTTATCCTCATCC 740
Score = 134 bits (72), Expect = 2e-30
Identities = 242/318 (76%), Gaps = 35/318 (11%)
Strand=Plus/Plus
Query 264 CCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTACCCA 323
||||| ||| |||| |||||||| || | || |||||||| |||||||||||||| |||
Sbjct 226 CCGCCAATCGAGAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCA 285
Query 324 CCGTCGCCGTACGAGAC-T-TACC-CT----CATCCACCGCCGATCAAAACTTACCCTCA 376
||| | || |||||| | | ||| | ||||||| |||||||| |||||||||||
Sbjct 286 CCGCCACCATACGAG-CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCA 344
Query 377 TCCGCCGGTGAAGTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGT---GAAGTA 433
||||||||||||||||||||| || | || | | | || | |||||| | ||||||
Sbjct 345 TCCGCCGGTGAAGTATCCTCCACC-AG-AACAGT-ATCC--A-CCGCCGATTAAGAAGTA 398
Query 434 TCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAA-A--TATCCTCCGCCGATCAA 490
|||||| || | || | | | || | |||||| | || | |||||||| || | ||
Sbjct 399 TCCTCCACC-AG-AACAGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACC-AG-AA 450
Query 491 AACTTACCCTCATCCGCCGGT---GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGAT 547
| | | ||| ||||| | |||||||||||| ||||||||||||||||| |||||
Sbjct 451 CAGT-AT--TCA-CCGCCTTTCAAGAAGTATCCTCCGCCAGAACAGTATCCACCACCGAT 506
Query 548 CAAGAAGTATCCACCGCC 565
|||||||||||| |||||
Sbjct 507 CAAGAAGTATCCTCCGCC 524
Score = 126 bits (68), Expect = 3e-28
Identities = 157/197 (80%), Gaps = 18/197 (9%)
Strand=Plus/Plus
Query 375 CATCCGCCGGTGAAGTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTAT 434
||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 301 CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTAT 360
Query 435 CCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAA-A--TATCCTCCGCCGATCAAA 491
||||| || | || | | | || | |||||| | || | |||||||| || | ||
Sbjct 361 CCTCCACC-AG-AACAGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACC-AG-AAC 412
Query 492 ACTTACCCTCATCCGCCGGT---GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATC 548
| | | || | |||||| | |||||||||||| |||||||||||| ||||||| ||
Sbjct 413 AGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACCAGAACAGTATTCACCGCCTTTC 468
Query 549 AAGAAGTATCCACCGCC 565
||||||||||| |||||
Sbjct 469 AAGAAGTATCCTCCGCC 485
Score = 124 bits (67), Expect = 1e-27
Identities = 154/192 (80%), Gaps = 22/192 (11%)
Strand=Plus/Plus
Query 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA 257
||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 630 GTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAA 689
Query 258 -TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA---T-ATCC--A-CCGCC-G 308
||||| ||||| | |||| |||||| || || || ||| | |||| | || || |
Sbjct 690 GTATCCTCCGCC-AG-AAGA-GTATCCACCACC-GATCAAGACTTATCCTCATCCCCCTG 745
Query 309 ATCAAGAAGTACCCACCGTCGCCGTACGAGACTTACCCTCATCCACCGCCGATCAAAACT 368
| |||||| |||||| | |||||| |||||||||||||||| |||||||||||||
Sbjct 746 -T---GAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCC---GCCGATCAAAACT 798
Query 369 TACCCTCATCCG 380
|| |||| ||||
Sbjct 799 TATCCTCCTCCG 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40840361511
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5