BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952254 Length=838 Score E Sequences producing significant alignments: (Bits) Value AT5G59170.1 | Symbols: | Proline-rich extensin-like family pro... 331 6e-90 > AT5G59170.1 | Symbols: | Proline-rich extensin-like family protein | chr5:23881988-23883122 FORWARD LENGTH=1135 Length=1135 Score = 331 bits (179), Expect = 6e-90 Identities = 253/288 (88%), Gaps = 7/288 (2%) Strand=Plus/Plus Query 512 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGACTT- 570 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | || Sbjct 627 GAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCC-AATTA 685 Query 571 A-CCCTCATCCACCG-GTG-A-AGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCG 626 | | |||| ||| | | |||||||||| |||||||||||||| |||||||| || Sbjct 686 AGAAGT-ATCCTCCGCCAGAAGAGTATCCACCACCGATCAAGACTTATCCTCATCCCCCT 744 Query 627 GTGAAGTATCCACCACCTCCGTACAAGACTTACCCTCATCCGCCGATCAAGACGTATCCT 686 |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 745 GTGAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCCGCCGATCAAAACTTATCCT 804 Query 687 CCTCCGAAGGAATGTCCTCCTCCGCCGGTACATTACCCTTTTCCCCCGATCAAGAAATAT 746 |||||||| ||||||||||||||||| | ||||||||||| || |||| ||||||||| Sbjct 805 CCTCCGAAAGAATGTCCTCCTCCGCCTGAACATTACCCTTGGCCTCCGAAAAAGAAATAT 864 Query 747 CCTCCACCGGTTGTGTATCCGTCGCCACCATATAAGAAGTATCCACCG 794 ||||||||||||| |||||||||||| ||||||||||| ||||| ||| Sbjct 865 CCTCCACCGGTTGAGTATCCGTCGCCGCCATATAAGAAATATCCTCCG 912 Score = 315 bits (170), Expect = 6e-85 Identities = 220/243 (91%), Gaps = 7/243 (3%) Strand=Plus/Plus Query 14 AAGAAAAATGAAGTCTTTTGTAGCTACTTTTGCTCTCGCAGTGTTGGTAACACAAGGAAG 73 ||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||| Sbjct 51 AAGAAAAATGAAGTCTTGTCTAGCTACTTTTGCTCTCGCAGTGTTAGTAACACAAGGAAG 110 Query 74 CATTTTTAGTTTGTGTTTGGCCTCTTCTTCTTCTACAAACTCCTTTTC-TAATTGGTTTC 132 |||||||||||||||||||||||| ||| ||||||||||||| | ||| ||||||||||| Sbjct 111 CATTTTTAGTTTGTGTTTGGCCTCCTCTGCTTCTACAAACTC-TGTTCCTAATTGGTTTC 169 Query 133 ATCATTGGCCGCCGTTTAAATGGCGACCAAAATTTCCATATTCTCCACCTACACCTCCGC 192 ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct 170 ATCATTGGCCGCCGTTTAAATGGGGACCAAAATTTCCATATTCTCCACCTAAACCGCCGC 229 Query 193 CAA-CTACG---TATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCG 248 ||| | | | ||||||||||| | || |||||||| ||||||||||||||||| ||| Sbjct 230 CAATCGA-GAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCACCG 288 Query 249 CCA 251 ||| Sbjct 289 CCA 291 Score = 185 bits (100), Expect = 5e-46 Identities = 198/242 (82%), Gaps = 20/242 (8%) Strand=Plus/Plus Query 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA-T 258 ||||||||| | |||||| |||||||| ||||| || |||||||||||||||||| || | Sbjct 552 GTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTATCCTCCGCCAGAA-AAGT 610 Query 259 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGT 318 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 611 ATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGT 670 Query 319 ACCCACCGTCGCCGT-ACGA-G-A-CTTAC-CCTCA----T--CCACCGCCGATCAAAAC 367 | || ||| | | | | || | | | | | || | | ||||| |||||||| || Sbjct 671 ATCCTCCG-C-CAATTAAGAAGTATCCTCCGCCAGAAGAGTATCCACCACCGATCAAGAC 728 Query 368 TTACCCTCATCCGCCGGTGAAGTATCCTCCGCC---G-ATCAAAACTTACCCTCATCCGC 423 ||| |||||||| || ||||||||||| ||||| | | ||| |||||||||||||||| Sbjct 729 TTATCCTCATCCCCCTGTGAAGTATCCACCGCCTCCGTA-CAAGACTTACCCTCATCCGC 787 Query 424 CG 425 || Sbjct 788 CG 789 Score = 174 bits (94), Expect = 1e-42 Identities = 116/127 (91%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA 259 |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| || Sbjct 435 GTATCCTCCACCAGAACAGTATTCACCGCCTTTCAAGAAGTATCCTCCGCCAGAACAGTA 494 Query 260 TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA 319 |||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct 495 TCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTATCCACCGCCGATAAAAAAGTA 554 Query 320 CCCACCG 326 || ||| Sbjct 555 TCCTCCG 561 Score = 169 bits (91), Expect = 5e-41 Identities = 256/330 (78%), Gaps = 34/330 (10%) Strand=Plus/Plus Query 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA 259 ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || Sbjct 474 GTATCCTCCGCCAGAACAGTATCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTA 533 Query 260 TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA 319 |||||||||||| || ||||||||||||| |||||| |||||||| ||||| || ||||| Sbjct 534 TCCACCGCCGATAAAAAAGTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTA 593 Query 320 CCCACCGTCGCCGTACGAG-A-CTTACCCTC-ATCCA-------CCGCCGATCAAAACT- 368 || ||| | | | | || | | |||| | ||| | || ||| || ||| Sbjct 594 TCCTCCG-C-CAGAAA-AGTATCC-ACCCCCGATCAAGAAGTATCCTCCGC-CAGAACAG 648 Query 369 TACCCTCATCCGCCGGT---GAAGTATCCTCCGCCGATCAA-AACTTACCCTCATCCGCC 424 || || | |||||| | ||||||||||||||| || || || | | |||| | ||| Sbjct 649 TATCC--A-CCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAAGT-ATCCTC--C-GCC 701 Query 425 GGT-GAAGTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAATATCCTCCGC 483 | || |||||| || |||||||| ||||| |||||||| || ||||| ||||| |||| Sbjct 702 AGAAGA-GTATCCACCACCGATCAAGACTTATCCTCATCCCCCTGTGAAGTATCCACCGC 760 Query 484 C---G-ATCAAAACTTACCCTCATCCGCCG 509 | | | ||| |||||||||||||||||| Sbjct 761 CTCCGTA-CAAGACTTACCCTCATCCGCCG 789 Score = 167 bits (90), Expect = 2e-40 Identities = 119/133 (89%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 512 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGA-CTT 570 ||| |||||||| || | ||||||||||| ||||||||||||||||||||||| | | | Sbjct 237 GAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCACCGCC-ACCAT 295 Query 571 ACCCTCATCCACCGGTGAAGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCGGTGA 630 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 296 ACGAGCATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGA 355 Query 631 AGTATCCACCACC 643 ||||||| ||||| Sbjct 356 AGTATCCTCCACC 368 Score = 148 bits (80), Expect = 6e-35 Identities = 94/101 (93%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 459 CATCCGCCGGTGAAATATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTAT 518 ||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||||||| Sbjct 301 CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTAT 360 Query 519 CCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCC 559 ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 361 CCTCCACCAGAACAGTATCCACCGCCGATTAAGAAGTATCC 401 Score = 147 bits (79), Expect = 2e-34 Identities = 133/157 (85%), Gaps = 11/157 (7%) Strand=Plus/Plus Query 200 GTATCCTCCACCAGAACAA-TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAAT 258 ||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| | Sbjct 591 GTATCCTCCGCCAGAA-AAGTATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGT 649 Query 259 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA-TATCCACCGCCGATCAAGA 315 |||||||||||||||||||||||||||||||| || || ||||| ||||| | |||| Sbjct 650 ATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAAGTATCCTCCGCC-AG-AAGA 707 Query 316 AGTACCCACCGTCGCCGTACGAGACTTACCCTCATCC 352 ||| ||||| || | | ||||||| |||||||| Sbjct 708 -GTATCCACCACCGA--T-CAAGACTTATCCTCATCC 740 Score = 134 bits (72), Expect = 2e-30 Identities = 242/318 (76%), Gaps = 35/318 (11%) Strand=Plus/Plus Query 264 CCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTACCCA 323 ||||| ||| |||| |||||||| || | || |||||||| |||||||||||||| ||| Sbjct 226 CCGCCAATCGAGAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCA 285 Query 324 CCGTCGCCGTACGAGAC-T-TACC-CT----CATCCACCGCCGATCAAAACTTACCCTCA 376 ||| | || |||||| | | ||| | ||||||| |||||||| ||||||||||| Sbjct 286 CCGCCACCATACGAG-CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCA 344 Query 377 TCCGCCGGTGAAGTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGT---GAAGTA 433 ||||||||||||||||||||| || | || | | | || | |||||| | |||||| Sbjct 345 TCCGCCGGTGAAGTATCCTCCACC-AG-AACAGT-ATCC--A-CCGCCGATTAAGAAGTA 398 Query 434 TCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAA-A--TATCCTCCGCCGATCAA 490 |||||| || | || | | | || | |||||| | || | |||||||| || | || Sbjct 399 TCCTCCACC-AG-AACAGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACC-AG-AA 450 Query 491 AACTTACCCTCATCCGCCGGT---GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGAT 547 | | | ||| ||||| | |||||||||||| ||||||||||||||||| ||||| Sbjct 451 CAGT-AT--TCA-CCGCCTTTCAAGAAGTATCCTCCGCCAGAACAGTATCCACCACCGAT 506 Query 548 CAAGAAGTATCCACCGCC 565 |||||||||||| ||||| Sbjct 507 CAAGAAGTATCCTCCGCC 524 Score = 126 bits (68), Expect = 3e-28 Identities = 157/197 (80%), Gaps = 18/197 (9%) Strand=Plus/Plus Query 375 CATCCGCCGGTGAAGTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTAT 434 ||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct 301 CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTAT 360 Query 435 CCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAA-A--TATCCTCCGCCGATCAAA 491 ||||| || | || | | | || | |||||| | || | |||||||| || | || Sbjct 361 CCTCCACC-AG-AACAGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACC-AG-AAC 412 Query 492 ACTTACCCTCATCCGCCGGT---GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATC 548 | | | || | |||||| | |||||||||||| |||||||||||| ||||||| || Sbjct 413 AGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACCAGAACAGTATTCACCGCCTTTC 468 Query 549 AAGAAGTATCCACCGCC 565 ||||||||||| ||||| Sbjct 469 AAGAAGTATCCTCCGCC 485 Score = 124 bits (67), Expect = 1e-27 Identities = 154/192 (80%), Gaps = 22/192 (11%) Strand=Plus/Plus Query 200 GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA 257 ||||||||| |||||||| ||||||||||||||||||||||||||||||||| || || Sbjct 630 GTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAA 689 Query 258 -TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA---T-ATCC--A-CCGCC-G 308 ||||| ||||| | |||| |||||| || || || ||| | |||| | || || | Sbjct 690 GTATCCTCCGCC-AG-AAGA-GTATCCACCACC-GATCAAGACTTATCCTCATCCCCCTG 745 Query 309 ATCAAGAAGTACCCACCGTCGCCGTACGAGACTTACCCTCATCCACCGCCGATCAAAACT 368 | |||||| |||||| | |||||| |||||||||||||||| ||||||||||||| Sbjct 746 -T---GAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCC---GCCGATCAAAACT 798 Query 369 TACCCTCATCCG 380 || |||| |||| Sbjct 799 TATCCTCCTCCG 810 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40840361511 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5