BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952255
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59210.1 | Symbols: | myosin heavy chain-related | chr5:238... 1033 0.0
> AT5G59210.1 | Symbols: | myosin heavy chain-related | chr5:23890606-23893665
REVERSE LENGTH=1547
Length=1547
Score = 1033 bits (559), Expect = 0.0
Identities = 609/634 (96%), Gaps = 0/634 (0%)
Strand=Plus/Plus
Query 1 AAGCCCTTAAGGAAATTGCAATGGAGAAAGATGCTGCTGTTGTTTTACGAGAGGATCTCT 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AAGCCCTCAAGGAAATTGCAATGGAGAAAGATGCTGCTGTTGTTTTACGAGAGGATCTCT 449
Query 61 CAGCTCAAGTTAGGACTCTTAAGAGACGTGTTAAAGAGGCAGAGGAGGAACAATATCGAG 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 450 CAGCTCAAGTTAGGACTCTTAAGAGACGTGTTAATCAGGCAGAGGAGGAACAATATCGAG 509
Query 121 CTGAGGAAGATGCGGCATCTCTGAGAGCAGAGCTTAACTCGATACAACAGCAAGCAATGG 180
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 510 CTGAGGAAGATGCAGCATCTCTTAGAGCAGAGCTTAATTCGATACAACAGCAAGCAATGG 569
Query 181 GTACTTCGTTTACTGGCCTGTCGCCAATGGGAGTTTCCTCAGACCAACTACCAATATTAG 240
||| ||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 570 GTAATTCATTTGCTGGCATGTCGCCAATGGGAGTTTCCCCAGACCAACTACCAATATTAG 629
Query 241 AAAAGGAGATGGCTAACCTAAAACTAGAATTACAGAAAGAATCAGTGTTAAGGCAGCAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 630 AAAAGGAGATGGCTAACCTAAAACTAGAATTACAGAAAGAATCAGTGTTGAGGCAGCAAG 689
Query 301 AACAACAGCGTTTAGCTGAAGAACAAACTCGAGTAGCTTCTTTAATGTCTGAAAAGCAGG 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 AACAACATCGTTTAGCTGAAGAACAAACTCGAGTAGCTTCTTTAATGTCTGAAAAGCAGG 749
Query 361 AACTGGAACAGAAGATTTCAGTTTTATCTAGCAGGGCCTCAGAAGTATCAGAGTCTGGTC 420
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 750 AACTGGAACAGAAAATTTCAGTTTTATCCAGCAGGGCCTCAGAAGTATCAGAGTCTGGTC 809
Query 421 AAAAGGCATTGTCAGTGGAAGATAAAGAAAAACTCGAGAAGCAGTTGCATGATATGGCTG 480
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AAAAAGTATTTTCAGTGGAAGATAAAGAAAAACTCGAGAAGCAGTTGCATGATATGGCTG 869
Query 481 TTGCACTTGAAAGATTAGAGAGTAGTAGGCAAAAACTTCTCATGGAGATTGACAACCAAT 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 870 TTGCACTTGAAAGATTAGAGAGTAGTAGGCAAAAACTTCTCATGGAAATTGACAACCAAT 929
Query 541 CATCTGAAATAGAGAGGCTTTTTGAGGAGAACTCGAACCTCTCGGCTTCATATCAAGAAT 600
||||||||||||||| ||| |||||||| |||||||||||||| ||||| ||||||||||
Sbjct 930 CATCTGAAATAGAGAAGCTATTTGAGGAAAACTCGAACCTCTCAGCTTCGTATCAAGAAT 989
Query 601 CAATCAACGTATCAAATCAGTGGGAGAATCAAGT 634
|||||||| |||||||||||||||||||||||||
Sbjct 990 CAATCAACATATCAAATCAGTGGGAGAATCAAGT 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33054068726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5