BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952262
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45063.1 | Symbols: | copper ion binding;electron carriers ... 800 0.0
> AT1G45063.1 | Symbols: | copper ion binding;electron carriers
| chr1:17033335-17035105 REVERSE LENGTH=1329
Length=1329
Score = 800 bits (433), Expect = 0.0
Identities = 641/741 (87%), Gaps = 16/741 (2%)
Strand=Plus/Plus
Query 77 TTCTGTTGGGTTGTTGTTCGGCAACGGTCCACAAAGTGGGAGACTCCGATGGATGGGC-C 135
|||| || |||||||||||||| || ||| |||||||||||||||||||||||||| |
Sbjct 275 TTCTCTTCGGTTGTTGTTCGGCCACCGTCTACAAAGTGGGAGACTCCGATGGATGGACTG 334
Query 136 CCTAAGGA--A----GACGACAATTGGACCGACCG-TGAGGAGTTCCACGTGGGAGATTC 188
|| ||||| | | || |||||||||| | | | ||| ||||||||||||||||
Sbjct 335 CC-AAGGACCACCTCTATTACCATTGGACCGA-GGATAAAGAGATCCACGTGGGAGATTC 392
Query 189 CCTGGTCTTTGAATATGATCGTAACTTCAACGATGTCACTCAAGTTTCCGGCGGTTTGGA 248
|| |||| ||||| |||| ||| |||| || ||||| ||||| ||||| ||||||||
Sbjct 393 TTTGATCTTCGAATACGATCACAACCTCAATGACGTCACACAAGTCTCCGGTGGTTTGGA 452
Query 249 GTACGAATTCTGTGACTCTTCTTTCCCTAAAGCCGTCTACAACACAGGCCACGATGTTGT 308
||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 453 ATACGAATTCTGCGACTCTTCTTTTCCTAAAGCCGTCTACAACACAGGACATGATGTCGT 512
Query 309 AACTTTAAAGGAACCAGGGTCTTACTACTTCATCACCTCAAACCATACTCAATGTACATC 368
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AACCTTCACGGAACCAGGGTCTTACTACTTCATCACCTCAAACCATACTCAATGTACATC 572
Query 369 GGGACAGAAGCT-GGACGTTCTTGTTACCCATGACCCGTCGAGTCCGATTCCTCCACCA- 426
|||||||| ||| || |||| |||| |||||||||||||||||||| ||||| ||||
Sbjct 573 GGGACAGAGGCTTGG-CGTTTTTGTCGTCCATGACCCGTCGAGTCCGAGTCCTCTACCAC 631
Query 427 TCACCGAGCAAGATTCTTCCGTCTGGAAATATCTACAAGGTAGGCGACTCCAAAAGATGG 486
| ||||||||||||| |||| ||| || || |||||||||| || ||||||||||| |||
Sbjct 632 T-ACCGAGCAAGATTATTCCTTCTAGACATGTCTACAAGGTTGGTGACTCCAAAAGTTGG 690
Query 487 AGCGTTTACGATAGTGAGTTCTATTACCAGTGGAGTAAAGAAAAACAATTCCATGTTGGA 546
|||||||||| ||||| ||||||||| | ||||||||||| ||||| ||| |||| |||
Sbjct 691 GGCGTTTACGACAGTGATTTCTATTACAACTGGAGTAAAGAGAAACAGTTCAATGTCGGA 750
Query 547 GACAGTCTCCTTTTCGAATACAACAACGAAGTCAATGATGTCTTCGAGATCAGCGGCGAC 606
||| |||||||||||||||||||||| |||||||| | ||||| |||||||||||| |||
Sbjct 751 GACGGTCTCCTTTTCGAATACAACAATGAAGTCAACGGTGTCTACGAGATCAGCGGTGAC 810
Query 607 CTTGAATTCCTATACTGCGACCCGATTTCTCCCGTAGCCGTGCACAAGACAGGCCACGAT 666
||||||||| || |||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 811 CTTGAATTCTTAAACTGCGACCCGACTTCTCCAATAGCCGTGCATAAGACAGGCCACGAT 870
Query 667 CTCATAAAGCTCACCGAACCAGGAATCCATTATTTCATTAGCTCAGAGCCAGGTCACTGT 726
|||| ||||||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 871 ATCATCAAGCTCACCAAACCAGGAATCCATTATTTCATTAGCTCAGAACCGGGTCACTGT 930
Query 727 GAGGCTGGACTTAAGCTCCAAGTTGTGGTTGGACCAACAGC-CAATGTTCCAAAGTTGTC 785
| |||||| |||||||||||||| ||||| ||| ||||| | ||||||||||||||||||
Sbjct 931 GGGGCTGGTCTTAAGCTCCAAGTCGTGGTCGGAACAACA-CTCAATGTTCCAAAGTTGTC 989
Query 786 ACCTTTAGAACGTCTCACAAG 806
||||||||| |||||||||||
Sbjct 990 ACCTTTAGAGCGTCTCACAAG 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5