BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952267

Length=1250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937022-9...   387    2e-106
  AT4G17914.1 | Symbols:  | pseudogene of ubiquitin-specific prot...   206    6e-52 
  AT4G17908.1 | Symbols:  | pseudogene of ubiquitin-specific prot...   132    1e-29 


> AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937022-9939493 
FORWARD LENGTH=1688
Length=1688

 Score =  387 bits (209),  Expect = 2e-106
 Identities = 368/441 (83%), Gaps = 26/441 (6%)
 Strand=Plus/Plus

Query  425  AAGTATCTCCTGGGTTTTCTTCTTATTCTGTCAAGGAAGAGTTACCTCCCAAAGAAACTT  484
            ||||||||  |||| ||||||||||||||||||||||||||||||||          | |
Sbjct  542  AAGTATCTAATGGGGTTTCTTCTTATTCTGTCAAGGAAGAGTTACCT----------C-T  590

Query  485  CTTCTGTGATACATGAAGCTACCAGTGCCACTTCTTCGCCTAAAGCTTCTAATGA-ATTT  543
             |||   || |||||||||||||||||| |||||||||||||||||||||||| | | ||
Sbjct  591  -TTC---GAAACATGAAGCTACCAGTGCTACTTCTTCGCCTAAAGCTTCTAAT-ACAGTT  645

Query  544  TTGCCTAGTACATTTACGAAACCTATCATTGCTAAGAGGACAGGAAAAACTGGTGGTCTT  603
             |||||||||| |||| |||||||||   |||||| ||||||||||||||||||||||||
Sbjct  646  GTGCCTAGTACGTTTAAGAAACCTATTGGTGCTAAAAGGACAGGAAAAACTGGTGGTCTT  705

Query  604  GGTGCAAGGAAGCTTACTACTAAGCCAAAGGAAAATCAT-TATGAGCAGACCCCGGAAGA  662
            ||||||||||||||||||||||||||||| || |||| | ||||||||||  ||||||||
Sbjct  706  GGTGCAAGGAAGCTTACTACTAAGCCAAAAGACAATC-TCTATGAGCAGAAACCGGAAGA  764

Query  663  -GTCTTCACTGCTTATTCCTGCAGCATCTTCAGCTATTAACCGCGGAAT-CAAATCATCA  720
             || | ||| | ||||||| || | ||| ||| | | |||| | ||||  ||||||||||
Sbjct  765  AGT-TGCACCGGTTATTCCCGCTGTATCATCAACAAATAACGG-GGAAAGCAAATCATCA  822

Query  721  GCTGCTTTTTCATCTGCCTCTCAGTTTGAGAACAATGACGACTTGCAATCCGGAGGACAA  780
            |||| ||  |||| |||||||| ||||||| ||||||||||| ||||||| |||||||||
Sbjct  823  GCTGGTTCATCATTTGCCTCTCGGTTTGAGTACAATGACGACCTGCAATCTGGAGGACAA  882

Query  781  AGCGGTGGTGGTGCACAAGTTCTTACCCATGTTGCTCCACCAAAGTCATCATCAAGCTTC  840
            |||| ||||||| ||||||| |||| ||||||||||||||||||||| |||  | |||||
Sbjct  883  AGCGTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTCA--A-GCTTC  939

Query  841  TTAGCAGATTCGGGAATGGAC  861
            ||  | ||||  |||||||||
Sbjct  940  TTTTCGGATTTTGGAATGGAC  960


 Score =  106 bits (57),  Expect = 6e-22
 Identities = 101/121 (83%), Gaps = 7/121 (6%)
 Strand=Plus/Plus

Query  878   AAGTTGAAGAATCAGATGAAGCAAGAAAGAGGTTCTCAAACGCAAAGTCCATTTCTTCTG  937
             |||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |
Sbjct  1004  AAGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGCAAAGTCCATATCTTCAG  1063

Query  938   CTCAGTTTTTTGGAGATGAGATGAAAT-CTGCTGGTCGTGATGAATCAGAAA-CTACCCT  995
             ||||||  ||||| ||| |||  |||  | |||| || ||  |||||| ||| |||| ||
Sbjct  1064  CTCAGTACTTTGGGGATCAGAACAAAAAC-GCTGATC-TG--GAATCA-AAAGCTACTCT  1118

Query  996   T  996
             |
Sbjct  1119  T  1119


> AT4G17914.1 | Symbols:  | pseudogene of ubiquitin-specific protease 
| chr4:9958159-9958733 FORWARD LENGTH=575
Length=575

 Score =  206 bits (111),  Expect = 6e-52
 Identities = 149/167 (89%), Gaps = 4/167 (2%)
 Strand=Plus/Plus

Query  253  ATGATGTTTGGTGGGAACTACCGCGCTCAGGTGTTCTTCAAGCAACATGGATGGACGGAC  312
            |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || 
Sbjct  1    ATGATGTTTGGTGGCAACTACCGTGCTCAGGTGTTCTTCAAGCAACATGGATGGACCGAT  60

Query  313  AATGGCAATATCG-AGTCTAAGTACACTTCAAGAGCTGCTGATTTGTATAGGCAGATTCT  371
              |||||| |||| || ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct  61   GGTGGCAAAATCGAAG-CTAAGTATACTTCGAGAGCTGCTGATTTGTATAGGCAGATTCT  119

Query  372  TGCTAAGGAAGTTGCTAAAGCCA-TCTCACAAGAGACTACCACTGAT  417
            |||||||||||||||| |||||| |  ||| ||| ||||| ||||||
Sbjct  120  TGCTAAGGAAGTTGCTGAAGCCAATG-CACTAGATACTACTACTGAT  165


> AT4G17908.1 | Symbols:  | pseudogene of ubiquitin-specific protease 
| chr4:9950633-9951125 FORWARD LENGTH=493
Length=493

 Score =  132 bits (71),  Expect = 1e-29
 Identities = 89/98 (91%), Gaps = 0/98 (0%)
 Strand=Plus/Plus

Query  210  ATCAACGAATTTAGACTCATGGAGCCCTGAGCAGCTTAGGGCAATGATGTTTGGTGGGAA  269
            ||| |||||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||
Sbjct  1    ATCGACGAATTTAGACTCATGGAGCCCTGAGCAGTTTAGGACAATGATATTTGGTGGCAA  60

Query  270  CTACCGCGCTCAGGTGTTCTTCAAGCAACATGGATGGA  307
            | ||   |||||||||||||||||||||||||||||||
Sbjct  61   CAACATTGCTCAGGTGTTCTTCAAGCAACATGGATGGA  98


 Score = 63.9 bits (34),  Expect = 4e-09
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  800  TTCTTACCCATGTTGCTCCACCAAAGTCATCATCAAG  836
            |||||| ||||||||||||||||||||||||||||||
Sbjct  236  TTCTTAGCCATGTTGCTCCACCAAAGTCATCATCAAG  272



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61445467080


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5