BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952288

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64110.1 | Symbols:  | Peroxidase superfamily protein | chr5...   928    0.0  


> AT5G64110.1 | Symbols:  | Peroxidase superfamily protein | chr5:25654074-25656030 
REVERSE LENGTH=1397
Length=1397

 Score =  928 bits (502),  Expect = 0.0
 Identities = 568/600 (95%), Gaps = 4/600 (1%)
 Strand=Plus/Plus

Query  1    AAAAACTAAGAAGAAACCAAAATGGGAAGTTCTACTAAAATT-AATCCTTGCTACGTTCT  59
            |||||||||||||||||||||||| |||||| |||| || || |||||||||||||||||
Sbjct  64   AAAAACTAAGAAGAAACCAAAATGAGAAGTTTTACT-AATTTAAATCCTTGCTACGTTCT  122

Query  60   CTTACCGTTTTTCCTTGTCCTAGCCGCGAATGCAACACATAAAAACGTTTTCCTCCCAAG  119
            ||||||||| ||||||||||||||| ||||||||||||||| ||||  ||||||||||||
Sbjct  123  CTTACCGTTCTTCCTTGTCCTAGCCACGAATGCAACACATACAAACAATTTCCTCCCAAG  182

Query  120  GCCACGGATC-GGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTGCGGTCCG  178
            |||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  183  GCCACGGA-CTGGGTATTACGGTAGTGCATGCTGGAATGTAGAATCGATAGTTCGGTCCG  241

Query  179  TGGTCGAGTCTAACTATCTTGCTAATCCAGCTAATGCTCCGGGCATTTTGCGTATGCACT  238
            |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  242  TGGTTGAGTCTAACTATCTTGCTAATCCAGCCAATGCTCCAGGCATTTTGCGTATGCACT  301

Query  239  TTCACGATTGTTTCGTCCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAACTCCG  298
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  302  TTCACGATTGTTTCGTTCAAGGCTGTGACGCCTCCGTTCTCCTAGCCGGACCTAACTCTG  361

Query  299  AGAGAACGGCGATTCCGAATCTATCGTTGAGAGGGTTTAATGTCATCGAAGAAGCTAAGA  358
            || ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  362  AGCGAACGGCGATTCCAAATCTATCGTTGAGAGGGTTTAATGTCATTGAAGAAGCTAAGA  421

Query  359  CGCAGCTTGAGATCGCTTGTCCTCGAACTGTCTCTTGTGCTGATATTCTCGCACTCGCTG  418
            | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct  422  CTCAGCTTGAGATCGCTTGTCCTCGAACAGTCTCTTGTGCTGATATCCTCGCACTCGCTG  481

Query  419  CACGCGACTTCGTCAATTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGCGACTCG  478
            |||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  482  CACGTGACTTCGTCCATTTGGCCGGTGGACCATGGTGGCCAGTTCCATTGGGGAGACTCG  541

Query  479  ATGGCCGGGTTTCGCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCGTTGCCG  538
            |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  542  ATGGCCGAATTTCTCTAGCCTCGAATGTCATTTTGCCGGGACCTACCGACTCCGTTGCCG  601

Query  539  TACAGAAGCTGAGGTTCGCCGaaaaaaaTCTTAATACCCAAGATCTCGTTGTCCTTGCTG  598
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  602  TGCAGAAGCTGAGGTTTGCCGAAAAAAATCTTAATACCCAAGATCTCGTTGTCCTTGCTG  661



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30441893082


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5