BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952294
Length=358
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36200.2 | Symbols: | P-loop containing nucleoside triphosp... 259 1e-68
> AT2G36200.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:15179869-15185314
REVERSE LENGTH=3457
Length=3457
Score = 259 bits (140), Expect = 1e-68
Identities = 176/193 (91%), Gaps = 3/193 (2%)
Strand=Plus/Plus
Query 24 GCCAACACGAATTGGTTGATTCAAGACTTCATGA-TTTCAAAGATGCCGTCTCTTCCAAC 82
|||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct 2467 GCCAACACGAATTGGTTGATTCAAGACTCCATAACTTT-AAAGATGCCGTCTCTTCCAAC 2525
Query 83 AAAAATTGTCTTGCACGAACATGTCTCTGCTGTTAATAATCTGACTAATGATGCAAAAAT 142
|||| || ||||| ||||||||||||||||||||||||||||||| || || |||||||
Sbjct 2526 AAAACTT-TCTTGGACGAACATGTCTCTGCTGTTAATAATCTGACGAAAGACGCAAAAAG 2584
Query 143 AAAGCGGGAGACATTCTCCATACAAGCTGAGGATGAAGCCAGAGAAGGTGCTGACTTCTC 202
|||| |||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 2585 AAAGTGGGAGACATTTTCCATGCAAGCTGAGAATGAAGCCAGAGAAGGTGCTGATTTCTC 2644
Query 203 AGCTGCAAAACAT 215
||||||||||||
Sbjct 2645 GGCTGCAAAACAT 2657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16789428166
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5