BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952295

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36200.2 | Symbols:  | P-loop containing nucleoside triphosp...   518    3e-146


> AT2G36200.2 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr2:15179869-15185314 
REVERSE LENGTH=3457
Length=3457

 Score =  518 bits (280),  Expect = 3e-146
 Identities = 346/377 (92%), Gaps = 8/377 (2%)
 Strand=Plus/Plus

Query  162   GGCAGTGCAGAATGTAGTTCGGTTGCACAAGGCAAACTG-GAATATGCTTGTCTTGAGGA  220
             |||||||||||||||||||||||| |||||||||||| | | | ||||||||||||||||
Sbjct  2030  GGCAGTGCAGAATGTAGTTCGGTTACACAAGGCAAAC-GCG-A-ATGCTTGTCTTGAGGA  2086

Query  221   AGTTTCAGCATTGACTACTTCAAGTGCATGTTCCATTGATGAGTTTCTTGCTTCAGGAGA  280
             ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct  2087  AGTTTCAGCATTGACGACTTCAAGTGCATGTTCCATTGATGAATTTCTTGCTTCAGGAGA  2146

Query  281   TGAGACAACAGT-GTCGCTATTTGATGAACTTCAGAGCACTCTCTCGTCCCATCAGGGAG  339
             ||| |||||| | |||| |||||||||||||||||||  |||||||||||||||||||||
Sbjct  2147  TGAAACAACA-TCGTCGTTATTTGATGAACTTCAGAGTGCTCTCTCGTCCCATCAGGGAG  2205

Query  340   AAATGGTTCTCTTTGCGAGGGAACTGAGGCAGAGGTTCCACACAACGATGGAGCAAACAC  399
             |||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct  2206  AAATGGCTCTCTTTGCGAGGGAACTGAGACAAAGGTTCCACACAACGATGGAGCAAACTC  2265

Query  400   AGGAGATGTTTGAATACACAAGTATGTTCTTTCAGAAGCTTATGGAAGAGTCTAAAAATT  459
             ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct  2266  AGGAGATGTCTGAATACACAAGTACGTTCTTTCAGAAGCTTATGGAAGAGTCTAAAAATG  2325

Query  460   CTGAGAGTCGTGTTGCAGAGGCAAATAATAGTTACATAAAACAGAATTTTTTATTTTCAG  519
             |||||| ||||| ||||||||||||| ||||| | ||||| ||| ||| || ||||||||
Sbjct  2326  CTGAGACTCGTGCTGCAGAGGCAAATGATAGTCAAATAAA-CAGCATTATTGATTTTCAG  2384

Query  520   AAGACTGACGAGG-TCA  535
             |||||| |||||| |||
Sbjct  2385  AAGACTTACGAGGCTCA  2401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26423161322


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5