BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952301
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29400.1 | Symbols: TOPP1, PP1-AT | type one protein phospha... 399 7e-111
> AT2G29400.1 | Symbols: TOPP1, PP1-AT | type one protein phosphatase
1 | chr2:12613081-12615399 REVERSE LENGTH=1404
Length=1404
Score = 399 bits (216), Expect = 7e-111
Identities = 236/246 (96%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 3 ACCTCTTTTAGATCGGAGATGGCGGAGAAGCCGGCGCAAGAGCAGGAGCAGAAGCGAGCG 62
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 99 ACCTCGTTTAGATCGGAGATGGCGGAGAAGCCGGCGCAAGAGCAAGAGCAGAAGCGAGCG 158
Query 63 ATGGAGCCGGGTGTTCTCGACGATATCATTCGTCGTTTGGTTGAGTTTCGGAACACGAGA 122
||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 159 ATGGAACCTGCAGTTCTCGACGATATTATTCGTCGTTTGGTTGAGTTTCGGAACACGAGA 218
Query 123 CCTGGATCGGGGAAACAAGTTCATCTCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTC 182
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 CCTGGATCGGGGAAGCAAGTTCATCTCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTC 278
Query 183 TCCAAAGAAATCTTTCTTCAACAACCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATC 242
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 279 TCCAAAGAAATATTTCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATC 338
Query 243 TGCGGT 248
||||||
Sbjct 339 TGCGGT 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5