BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952309
Length=199
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23020.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 261 2e-69
> AT3G23020.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:8177215-8179743 REVERSE LENGTH=2529
Length=2529
Score = 261 bits (141), Expect = 2e-69
Identities = 178/196 (91%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 3 GAAACATCAATGGTGAGAAAAATGGAAGCTATATTCGAAAGCATGAAACAGAGAAGAGAA 62
|||| ||| |||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 2083 GAAAGATCGATGGTGAGAAAAGCAGAAGCTATATTCGATAGCATGAAACAGAGAGGAGAA 2142
Query 63 GCAAACGAGTTCACCTTCGGGATGATGTTATGTATGTACAAGAAGAATGGAAGGTTCGAA 122
||||||||||| ||||| | ||||||||||||||||||||||||||| || |||| |||
Sbjct 2143 GCAAACGAGTTTACCTTTGCGATGATGTTATGTATGTACAAGAAGAACGGTCGGTTTGAA 2202
Query 123 GAAGCGACTCAGATAGCAAAACAGATGAGAGAGATGAAGATTCGA-CTGATCCGTTGAGT 181
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2203 GAAGCGACTCAGATAGCAAAACAGATGAGAGAGATGAAGATTCTAACTGATCCGTTGAGC 2262
Query 182 TACAACA-CGTTCTCG 196
||||||| ||||||||
Sbjct 2263 TACAACAGCGTTCTCG 2278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8853037776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5