BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952311
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27880.1 | Symbols: AGO5 | Argonaute family protein | chr2:1... 1367 0.0
> AT2G27880.1 | Symbols: AGO5 | Argonaute family protein | chr2:11871488-11876894
FORWARD LENGTH=3176
Length=3176
Score = 1367 bits (740), Expect = 0.0
Identities = 836/883 (95%), Gaps = 3/883 (0%)
Strand=Plus/Plus
Query 1 CTGATCGCCCAACCATAATCATGGGTGCTGATGTGACTCATCCGCAACCTGGAGAGGACT 60
||||||| |||||||| ||||||||||||||||||||||| || || |||||||||||||
Sbjct 2132 CTGATCGTCCAACCATCATCATGGGTGCTGATGTGACTCACCCACAGCCTGGAGAGGACT 2191
Query 61 CGAGTCCTTCTATTGCTGCTGTTGTGGCCTCTATGGACTGGCCTGAGAT-AACTAAATAC 119
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2192 CAAGTCCTTCTATTGCTGCTGTTGTGGCCTCTATGGACTGGCCTGAGATAAAC-AAATAC 2250
Query 120 CGAGGACTGGTTTCTGCTCAAGCTCATAGGGAAGAAATTATCCAGGACCTGTATAAGCTG 179
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2251 CGAGGATTGGTTTCTGCTCAAGCTCATAGGGAAGAAATTATTCAGGACCTGTATAAGCTG 2310
Query 180 GTTCAGGATCCACAACGTGGGCTAGTCCACTCTGGTTTGATAAGGGAACATTTCATAGCA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 GTTCAGGATCCACAACGTGGGCTAGTCCACTCTGGTTTGATAAGGGAACATTTCATAGCA 2370
Query 240 TTCAGGAGAGCTACGGGCCAGATACCTCAAAGGATTATCTTCTATCGCGACGGAGTAAGC 299
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2371 TTCAGGAGAGCTACAGGCCAGATACCTCAAAGGATCATCTTCTATCGTGACGGAGTAAGC 2430
Query 300 GAAGGGCAGTTTAGTCAGGTTCTGCTGCATGAGATGACTGCTATACGAAAGGCTTGTAAC 359
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 2431 GAAGGGCAGTTTAGTCAGGTTCTGCTACATGAGATGACTGCTATCCGCAAGGCTTGTAAC 2490
Query 360 TCTCTCCAAGAGAACTATGTTCCTCGTGTCACTTTCGTGATTGTCCAGAAACGTCACCAC 419
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2491 TCTCTCCAAGAGAATTATGTTCCTCGTGTTACTTTCGTGATTGTCCAGAAACGTCACCAC 2550
Query 420 ACTCGTTTGTTCCCTGAGCAACACGGGAATCGTGATACGACTGATAAAAGTGGCAATATT 479
|| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2551 ACACGTTTGTTCCCTGAGCAACACGGGAATCGTGATATGACTGATAAGAGTGGCAATATT 2610
Query 480 CAACCAGGTACTGTCGTTGACACTACAATCTGTCACCCGAATGAGTTCGACTTCTATTTG 539
||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 2611 CAACCAGGTACTGTCGTGGACACTAAAATCTGTCACCCTAATGAATTCGACTTCTATTTG 2670
Query 540 AACAGCCATGCTGGTATTCAGGGAACAAGCAGGCCGGCGCATTACCATGTTCTCCTCGAC 599
|||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 2671 AACAGCCATGCTGGTATTCAGGGAACAAGCAGGCCGGCACATTACCATGTACTTCTCGAT 2730
Query 600 GAGAACCGTTTCACTGCTGATCAGTTGCAAATGCTCACCAACAACCTCTGCTACACGTTT 659
|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 2731 GAGAACGGTTTCACCGCTGATCAGTTGCAAATGCTCACAAACAACCTCTGCTACACGTAT 2790
Query 660 GCGAGGTGCACAAGATCTGTGTCAATTGTGCCACCAGCCTACTACGCTCACTTGGCTGCT 719
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2791 GCGAGGTGTACAAAATCTGTGTCAATTGTGCCACCAGCCTACTACGCTCACTTGGCTGCA 2850
Query 720 TTCCGTGCCCGCTACTACATGGAGAGTGAGATGTCTGATGGAGGCTCGAGCAGGTCGAGG 779
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2851 TTCCGTGCCCGCTACTACATGGAGAGTGAGATGTCTGATGGAGGTTCGAGCAGGTCCAGG 2910
Query 780 AACACAACAACAGGTGCGGGTCAAGTCATTTCGCAGCTCCCAGCAATAAAAGATAACGTC 839
| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2911 AGCTCAACAACAGGTGTGGGTCAAGTCATTTCGCAGCTCCCAGCAATAAAAGATAACGTC 2970
Query 840 AAGGACGTTATGTTTTACTGCTGATGATACTTCTTCTTCTCTT 882
||||| ||||||||||| |||| ||||| | |||||||||||
Sbjct 2971 AAGGAGGTTATGTTTTATTGCTAATGATTCA-CTTCTTCTCTT 3012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43151132273
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5