BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952312

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family | ...   220    4e-57
  AT4G36130.1 | Symbols:  | Ribosomal protein L2 family | chr4:17...   187    4e-47


> AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family 
| chr2:7837102-7838304 FORWARD LENGTH=970
Length=970

 Score =  220 bits (119),  Expect = 4e-57
 Identities = 145/158 (92%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  55   TGCTCAAGGCAGGTAACGCGTACCACAAGTACCGTGTGAAGAGAAACTCATGGCGTAAGG  114
            ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct  585  TGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGG  644

Query  115  TTCGTGGTGTGGCTATGAACCCAGTGGAGCATTTTCATGGAGGAGGTAACCATCAACACA  174
            ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||| ||||
Sbjct  645  TTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACA  704

Query  175  TAGGTCAAGCTAGTACGGTTAGGCGGGATGCATCTCCT  212
            | ||||| || ||||| |||||||| |||||| |||||
Sbjct  705  TTGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCT  742


> AT4G36130.1 | Symbols:  | Ribosomal protein L2 family | chr4:17097565-17098879 
FORWARD LENGTH=1048
Length=1048

 Score =  187 bits (101),  Expect = 4e-47
 Identities = 136/153 (89%), Gaps = 2/153 (1%)
 Strand=Plus/Plus

Query  55   TGCTCAAGGCAGGTAACGCGTACCACAAGTACCGTGTGAAGAGAAACT-CATGGCGTAAG  113
            |||||||||| |||||||| |||||||||||||||||||||||||||| | |||| ||||
Sbjct  584  TGCTCAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGC-TGGCCTAAG  642

Query  114  GTTCGTGGTGTGGCTATGAACCCAGTGGAGCATTTTCATGGAGGAGGTAACCATCAACAC  173
            |||||||||||||||||||| ||||| ||||||  ||| |||||||||||||||||||| 
Sbjct  643  GTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATCAACAT  702

Query  174  ATAGGTCAAGCTAGTACGGTTAGGCGGGATGCA  206
            || ||||| |||||||| ||| | || ||||||
Sbjct  703  ATTGGTCACGCTAGTACTGTTCGTCGTGATGCA  735



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13471756732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5