BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952322

Length=242
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56000.1 | Symbols: Hsp81.4, AtHsp90.4 | HEAT SHOCK PROTEIN ...   368    1e-101
  AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 |...   326    7e-89 
  AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5...   307    3e-83 


> AT5G56000.1 | Symbols: Hsp81.4, AtHsp90.4 | HEAT SHOCK PROTEIN 
81.4 | chr5:22677451-22680152 REVERSE LENGTH=2336
Length=2336

 Score =  368 bits (199),  Expect = 1e-101
 Identities = 228/242 (94%), Gaps = 1/242 (0%)
 Strand=Plus/Plus

Query  1     GTTACAGGTCAAGCAAGAAGACTATGGAGATAAACCCAGAGAACTCCATCATGGACGAGC  60
             |||||| ||||||||||||||| ||||| || |||||||||||||| |||||||| ||||
Sbjct  1875  GTTACATGTCAAGCAAGAAGACAATGGAAATTAACCCAGAGAACTCGATCATGGATGAGC  1934

Query  61    TGAGAAAGAGAGCCGACGCGGACAAGAACGATAAGTCTGTGAAGGATCTTGTGCTTCTTC  120
             ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1935  TGAGAAAGAGAGCTGAAGCGGACAAGAACGATAAGTCTGTGAAGGATCTTGTGCTTCTTC  1994

Query  121   TCTTTGAGACCGCTCTTCTCACTTCTGGTTTCAGCCTCGATGAGCCCAACACTTTTGGAA  180
             |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  1995  TCTTTGAGACCGCTCTTCTCACCTCTGGTTTCAGCCTTGATGAGCCCAACACTTTTGGAA  2054

Query  181   GCAGAATCCATAGGATGTTGAAGCTTGGATTGAGCATTTGACGATGATGATGCCGTTGAA  240
             |||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct  2055  GCAGAATCCACAGGATGTTGAAGCTTGGATTGAGCATT-GAAGAGGATGATGCCGTTGAA  2113

Query  241   GC  242
             ||
Sbjct  2114  GC  2115


> AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 
| heat shock protein 81-3 | chr5:22681305-22684129 FORWARD 
LENGTH=2423
Length=2423

 Score =  326 bits (176),  Expect = 7e-89
 Identities = 219/240 (91%), Gaps = 1/240 (0%)
 Strand=Plus/Plus

Query  3     TACAGGTCAAGCAAGAAGACTATGGAGATAAACCCAGAGAACTCCATCATGGACGAGCTG  62
             |||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct  1897  TACATGTCGAGCAAGAAGACAATGGAGATTAACCCAGAGAACTCCATCATGGATGAGCTG  1956

Query  63    AGAAAGAGAGCCGACGCGGACAAGAACGATAAGTCTGTGAAGGATCTTGTGCTTCTTCTC  122
             ||||||||||| || || ||||||||||| |||||||||||||| ||||| |||||||||
Sbjct  1957  AGAAAGAGAGCTGATGCAGACAAGAACGACAAGTCTGTGAAGGACCTTGTACTTCTTCTC  2016

Query  123   TTTGAGACCGCTCTTCTCACTTCTGGTTTCAGCCTCGATGAGCCCAACACTTTTGGAAGC  182
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  2017  TTTGAGACCGCTCTTCTCACTTCTGGTTTCAGCCTCGATGAGCCCAACACTTTCGGGAGC  2076

Query  183   AGAATCCATAGGATGTTGAAGCTTGGATTGAGCATTTGACGATGATGATGCCGTTGAAGC  242
             || || || ||||||||||||||||||||||||||| || || |||||||  ||||||||
Sbjct  2077  AGGATTCACAGGATGTTGAAGCTTGGATTGAGCATT-GATGACGATGATGTTGTTGAAGC  2135


> AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5:22686832-22689471 
FORWARD LENGTH=2316
Length=2316

 Score =  307 bits (166),  Expect = 3e-83
 Identities = 217/242 (90%), Gaps = 1/242 (0%)
 Strand=Plus/Plus

Query  1     GTTACAGGTCAAGCAAGAAGACTATGGAGATAAACCCAGAGAACTCCATCATGGACGAGC  60
             |||||| ||| || |||||||| |||||||| || |||||||||||||||||||| ||| 
Sbjct  1968  GTTACATGTCGAGTAAGAAGACAATGGAGATTAATCCAGAGAACTCCATCATGGATGAGT  2027

Query  61    TGAGAAAGAGAGCCGACGCGGACAAGAACGATAAGTCTGTGAAGGATCTTGTGCTTCTTC  120
             |||||||| |||| ||||| ||||||||||| |||||||||||||| ||||||||||| |
Sbjct  2028  TGAGAAAGCGAGCTGACGCAGACAAGAACGACAAGTCTGTGAAGGACCTTGTGCTTCTCC  2087

Query  121   TCTTTGAGACCGCTCTTCTCACTTCTGGTTTCAGCCTCGATGAGCCCAACACTTTTGGAA  180
             ||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct  2088  TCTTTGAGACCGCTCTTCTCACTTCTGGTTTCAGCCTTGATGAGCCAAACACTTTCGGAA  2147

Query  181   GCAGAATCCATAGGATGTTGAAGCTTGGATTGAGCATTTGACGATGATGATGCCGTTGAA  240
             |||| ||||| |||||| ||||||||||| |||||||| || || |||||||| ||||||
Sbjct  2148  GCAGGATCCACAGGATGCTGAAGCTTGGACTGAGCATT-GATGACGATGATGCTGTTGAA  2206

Query  241   GC  242
             ||
Sbjct  2207  GC  2208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10958369282


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5