BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952326
Length=256
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57070.1 | Symbols: | Glutaredoxin family protein | chr3:21... 375 8e-104
> AT3G57070.1 | Symbols: | Glutaredoxin family protein | chr3:21123924-21125647
FORWARD LENGTH=1724
Length=1724
Score = 375 bits (203), Expect = 8e-104
Identities = 232/246 (94%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 ATGGTGGTGAATTAGCAGAGATGTTGAAAGATTTCCCTGCTTGTGAACGCTTGGGGACAT 1358
Query 61 GCCGTAGCTGTGGGGATGCAAGGTTTGTGCCTTGTACTAACTGCGACGGAAGCACCAAAG 120
|||| |||||||| ||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1359 GCCGGAGCTGTGGTGATGCAAGGTTTGTGCCTTGTACTAACTGTGATGGTAGCACCAAAG 1418
Query 121 TGTTTGAAGAACAAGACGAACGGTTCAAGCGATGTCCTAAATGCAATGAGAATGGATTGG 180
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1419 TGTTTGAAGAACAAGATGAACGGTTTAAGCGGTGTCCTAAATGCAATGAGAATGGATTGG 1478
Query 181 TGCGTTGTCGTGTGT-T-GTCTCTAAGTGATCTGTTTGATCAAAAGCTGTGTGGGTGAAA 238
||||||||||||||| | |||||||||||||| ||||||||||||| |||||| | ||||
Sbjct 1479 TGCGTTGTCGTGTGTGTTGTCTCTAAGTGATCAGTTTGATCAAAAGATGTGTGTGAGAAA 1538
Query 239 GGGGAT 244
||||||
Sbjct 1539 GGGGAT 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11662117768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5